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SCNpilot_expt_1000_bf_scaffold_3275_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3275_curated_1
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..361)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TP50_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE08238.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
outer membrane receptor
SCNpilot_expt_1000_bf_scaffold_3275_curated_2
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(554..1006)
DNA (453bp) protein (151aa)
Transcriptional regulator, TetR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8L3_STAND
Uncharacterized protein {ECO:0000313|EMBL:KFN45335.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3275_curated_3
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1356..2090
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PL39_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CDX45277.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3275_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2249..2833
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFS7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41492.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cytochrome c protein
SCNpilot_expt_1000_bf_scaffold_3275_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3074..4051
DNA (978bp) protein (326aa)
C4-dicarboxylate ABC transporter substrate-binding protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039DD9A6
Tricarboxylic transport membrane protein {ECO:0000313|EMBL:KDP75823.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3275_curated_6
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4129..4608
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003717870
Tricarboxylic transport {ECO:0000313|EMBL:KFI24528.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
tricarboxylic transport
SCNpilot_expt_1000_bf_scaffold_3275_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5037..6086
DNA (1050bp) protein (350aa)
tripartite tricarboxylate transporter TctA n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031E1902
Uncharacterized protein {ECO:0000313|EMBL:EYR81677.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
52.8 kDa protein in TAR-I ttuC' 3'region
SCNpilot_expt_1000_bf_scaffold_3275_curated_8
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7828..8079
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003690824
hypothetical protein
Bll5175 protein {ECO:0000313|EMBL:BAC50440.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_expt_1000_bf_scaffold_3275_curated_9
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8121..8564)
DNA (444bp) protein (148aa)
Transcriptional regulator MntR n=4 Tax=Rhodobacter capsulatus RepID=D5ANL3_RHOCB
Manganese transport regulator MntR {ECO:0000313|EMBL:BAQ70898.1}; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
mntR; transcriptional regulator MntR; K11924 DtxR family transcriptional regulator, manganese transport regulator
SCNpilot_expt_1000_bf_scaffold_3275_curated_10
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8745..10040
DNA (1296bp) protein (432aa)
Divalent metal cation transporter MntH n=1 Tax=Celeribacter baekdonensis B30 RepID=K2KA65_9RHOB
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
NRAMP family Mn2+/Fe2+ transporter; K03322 manganese transport protein
SCNpilot_expt_1000_bf_scaffold_3275_curated_11
Halomonas sp. BC04, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10120..10542)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00036ADB6F
Uncharacterized protein {ECO:0000313|EMBL:EWH01424.1}; TaxID=1403540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. BC04.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3275_curated_12

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11235..11630
DNA (396bp) protein (132aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Streptomyces sp. Amel2xE9 RepID=UPI0003820FD8
PhnB protein {ECO:0000313|EMBL:AGS49302.1}; TaxID=1366601 species="Bacteria; environmental samples.;" source="uncultured bacterium esnapd2.;"
3-demethylubiquinone-9 3-methyltransferase
SCNpilot_expt_1000_bf_scaffold_3275_curated_13
bacterium YEK0313, Bacteria

Not on your lists

11806..12207
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Halomonas titanicae BH1 RepID=L9UBS2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CEJ10899.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
DoxX family protein
SCNpilot_expt_1000_bf_scaffold_3275_curated_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12339..13148
DNA (810bp) protein (270aa)
SAM-dependent methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036E2A6B
putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Displaying 14 items

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