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SCNpilot_expt_1000_bf_scaffold_1547_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1547_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..527
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003726BE8
Protease {ECO:0000313|EMBL:AHB48244.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
peptidase U32
SCNpilot_expt_1000_bf_scaffold_1547_curated_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(576..1742)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=4 Tax=Corynebacterium RepID=U7K5H5_9CORY
carboxylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_1547_curated_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(2045..3037)
DNA (993bp) protein (331aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; K02051 NitT/TauT family transport system substrate-binding protein id=14625711 bin=bin7_NC10_sister species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
family 3 extracellular solute-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
Tax=CSP1_6_Rokubacteria
SCNpilot_expt_1000_bf_scaffold_1547_curated_4
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3092..3844)
DNA (753bp) protein (251aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CDZ8_DESTA
ABC transporter {ECO:0000313|EMBL:KJS03693.1}; TaxID=1629716 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4a.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
SCNpilot_expt_1000_bf_scaffold_1547_curated_5
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3857..4684)
DNA (828bp) protein (276aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CDZ6_DESTA
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:AFM27787.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
SCNpilot_expt_1000_bf_scaffold_1547_curated_6
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4808..6187)
DNA (1380bp) protein (460aa)
pyruvate carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QLS3_RALPI
Putative biotin carboxylase {ECO:0000313|EMBL:GAF50178.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
SCNpilot_expt_1000_bf_scaffold_1547_curated_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6192..6704)
DNA (513bp) protein (171aa)
Acetyl-CoA carboxylase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QG37_RALPI
biotin carboxyl carrier protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_1547_curated_8
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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comp(6701..7525)
DNA (825bp) protein (275aa)
Transcriptional regulator, IclR family id=14625722 bin=bin7_NC10_sister species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
IclR family transcriptional regulator
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
SCNpilot_expt_1000_bf_scaffold_1547_curated_9
unknown

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8003..8299
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1547_curated_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8373..9311)
DNA (939bp) protein (313aa)
Chloride peroxidase {ECO:0000313|EMBL:EEF60940.1}; EC=1.11.1.10 {ECO:0000313|EMBL:EEF60940.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
chloride peroxidase; K00433 chloride peroxidase [EC:1.11.1.10] rbh
Chloride peroxidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH19_9BACT
SCNpilot_expt_1000_bf_scaffold_1547_curated_11
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9576..10211)
DNA (636bp) protein (212aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9]
Uracil phosphoribosyltransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TW91_9PROT
SCNpilot_expt_1000_bf_scaffold_1547_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10354..10923)
DNA (570bp) protein (190aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F1CE00
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_1547_curated_13
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11006..13114)
DNA (2109bp) protein (703aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI000372DCAE
Alpha/beta hydrolase {ECO:0000313|EMBL:KJC54022.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_1547_curated_14
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13119..13733)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HD10_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX67002.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1547_curated_15
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13756..14532)
DNA (777bp) protein (259aa)
Membrane protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HDJ0_9RHIZ
Membrane protein {ECO:0000313|EMBL:ESZ54758.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
Conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_1547_curated_16
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15025..15813
DNA (789bp) protein (263aa)
FMN-dependent alpha-hydroxy acid dehydrogenase; K00104 glycolate oxidase [EC:1.1.3.15]
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XQF6_PSEMY
FMN-dependent alpha-hydroxy acid dehydrogenase {ECO:0000313|EMBL:ABP83572.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
SCNpilot_expt_1000_bf_scaffold_1547_curated_17
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15832..16824)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003635D62
Energy transducer TonB {ECO:0000313|EMBL:KJR63923.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
tonB; Ferric siderophore transporter; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_1547_curated_18
unknown

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comp(16782..17675)
DNA (894bp) protein (298aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J630_HYPSM
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:CPR16816.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Sel1 domain-containing protein repeat-containing protein (fragment); K07126
SCNpilot_expt_1000_bf_scaffold_1547_curated_19
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17675..18355)
DNA (681bp) protein (227aa)
PKHD-type hydroxylase W911_04285 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hydroxylase; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
Fe(II)-dependent oxygenase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368B516
SCNpilot_expt_1000_bf_scaffold_1547_curated_20
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18423..19040)
DNA (618bp) protein (206aa)
Ligand-gated channel protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBC1_9RHIZ
Ligand-gated channel protein {ECO:0000313|EMBL:AHB47803.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_1547_curated_21
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19077..20858)
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035F3625
TonB-dependent siderophore receptor {ECO:0000313|EMBL:CDR89924.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_1547_curated_22
unknown

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21899..22096
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1547_curated_23
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22533..22856)
DNA (324bp) protein (108aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Short chain dehydrogenase (Fragment) n=1 Tax=uncultured bacterium RepID=K2AF40_9BACT
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KJC40896.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
Displaying 23 items

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