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SCNpilot_expt_1000_bf_scaffold_5641_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5641_curated_1
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

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comp(148..360)
DNA (213bp) protein (71aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
SCNpilot_expt_1000_bf_scaffold_5641_curated_2
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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638..1375
DNA (738bp) protein (246aa)
lactate dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000367CD64
Lactate dehydrogenase {ECO:0000313|EMBL:KJC34215.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
FAD linked oxidase; K06911
SCNpilot_expt_1000_bf_scaffold_5641_curated_3
unknown

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1372..2703
DNA (1332bp) protein (444aa)
Aspartyl-tRNA(Asn) amidotransferase subunit A {ECO:0000313|EMBL:CPR22591.1}; EC=6.3.5.6 {ECO:0000313|EMBL:CPR22591.1};; EC=6.3.5.7 {ECO:0000313|EMBL:CPR22591.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Amidase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZD3_9RHIZ
amidase
SCNpilot_expt_1000_bf_scaffold_5641_curated_4
unknown

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comp(2693..3532)
DNA (840bp) protein (280aa)
Type 11 methyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SC46_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR19509.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5641_curated_5
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4018..4500
DNA (483bp) protein (161aa)
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Ribonuclease PH n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9X8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5641_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4542..4847
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0002E25888
Antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ACS22840.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_5641_curated_7
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4858..5703)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KH98_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPC01325.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5641_curated_8
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5900..6244
DNA (345bp) protein (115aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B670_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KAI95160.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
thiamine biosynthesis protein ThiS
SCNpilot_expt_1000_bf_scaffold_5641_curated_9
unknown

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6244..7083
DNA (840bp) protein (280aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
thiazole synthase n=1 Tax=Xanthobacteraceae RepID=UPI00035C1C7C
thiG; thiazole synthase; K03149 thiamine biosynthesis ThiG
SCNpilot_expt_1000_bf_scaffold_5641_curated_10
unknown

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7359..7715
DNA (357bp) protein (119aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826, ECO:0000313|EMBL:CPR19746.1};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Thiamine-phosphate synthase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFM8_9RHIZ
Displaying 10 items

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