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SCNpilot_expt_1000_bf_scaffold_6507_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6507_curated_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..688
DNA (687bp) protein (229aa)
Inner-membrane translocator n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A167_STAND
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADH89425.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_6507_curated_2
unknown

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comp(822..1028)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6507_curated_3
bacterium YEK0313, Bacteria

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1258..2130
DNA (873bp) protein (291aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000307E8FF
Leucine/isoleucine/valine transporter permease subunit {ECO:0000313|EMBL:CEJ13682.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6507_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2130..3038
DNA (909bp) protein (303aa)
branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Xanthobacteraceae RepID=UPI00037351EC
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADH89427.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_6507_curated_5
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3035..3772
DNA (738bp) protein (246aa)
amino acid ABC transporter ATPase n=1 Tax=Kaistia granuli RepID=UPI0003753C40
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EIM25657.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_6507_curated_6
unknown

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3791..4147
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNW6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR21372.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6507_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4324..5439
DNA (1116bp) protein (372aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNW7_9RHIZ
Extracellular ligand-binding receptor {ECO:0000313|EMBL:KFC67645.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6507_curated_8
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5450..6619
DNA (1170bp) protein (390aa)
Extracellular ligand-binding receptor n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LYK9_HALO1
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ACY17875.1}; Flags: Precursor;; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
SCNpilot_expt_1000_bf_scaffold_6507_curated_9
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6686..6943)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQS8_METTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ06602.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_6507_curated_10
unknown

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7880..8158
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6507_curated_11
unknown

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8579..8788
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6507_curated_12
unknown

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8792..8986
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6507_curated_13
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9159..10394)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003693C1C
Uncharacterized protein {ECO:0000313|EMBL:KFG67913.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
periplasmic serine protease, DO/DeqQ family
SCNpilot_expt_1000_bf_scaffold_6507_curated_14
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10910..11815)
DNA (906bp) protein (302aa)
Transcriptional regulator LysR family putative n=1 Tax=Burkholderia sp. RPE64 RepID=R4X4Y9_9BURK
transcriptional regulator LysR family putative
Transcriptional regulator LysR family putative {ECO:0000313|EMBL:BAN27722.1}; TaxID=758793 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
SCNpilot_expt_1000_bf_scaffold_6507_curated_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11969..12730
DNA (762bp) protein (254aa)
Extracellular solute-binding protein family 1 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A431_STAND
family 1 extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ADH87851.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Displaying 15 items

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