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SCNpilot_expt_1000_bf_scaffold_3511_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3511_curated_1
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..174
DNA (174bp) protein (58aa)
2 4-dienoyl-CoA reductase {ECO:0000313|EMBL:ETR76707.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_1000_bf_scaffold_3511_curated_2
unknown

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comp(242..457)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3511_curated_3
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

738..1766
DNA (1029bp) protein (343aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
multi-sensor signal transduction histidine kinase (EC:2.7.3.-); K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
Two-component sensor histidine kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PKL2_9RHOB
SCNpilot_expt_1000_bf_scaffold_3511_curated_4
unknown

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comp(2557..2841)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDB9_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:CPR19811.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3511_curated_5
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3063..4361)
DNA (1299bp) protein (433aa)
hemL; glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJY8_9PROT
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:EDP66925.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_1000_bf_scaffold_3511_curated_6
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4518..5564
DNA (1047bp) protein (349aa)
dehydrogenase; K13574 uncharacterized oxidoreductase [EC:1.1.1.-] rbh
Blr7581 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89D62_BRADU
Putative malate dehydrogenase {ECO:0000313|EMBL:KGJ63960.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_expt_1000_bf_scaffold_3511_curated_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5742..6260
DNA (519bp) protein (173aa)
Photosystem reaction center subunit H n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFN1_9RHIZ
Photosystem reaction center subunit H {ECO:0000313|EMBL:AHB49328.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
PRC-barrel domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3511_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6376..6732
DNA (357bp) protein (119aa)
Photosystem reaction center subunit H n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SHR9_9RHIZ
Photosystem reaction center subunit H {ECO:0000313|EMBL:AHB49600.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
PRC-barrel domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3511_curated_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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6855..7661
DNA (807bp) protein (269aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX04625.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
amidohydrolase 2 id=2995748 bin=GWF2_Methylomirabilis_70_14 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase 2
SCNpilot_expt_1000_bf_scaffold_3511_curated_10
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7785..9332
DNA (1548bp) protein (516aa)
Membrane protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKZ6_9BRAD
Membrane protein {ECO:0000313|EMBL:CCE07134.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
anion transporter
SCNpilot_expt_1000_bf_scaffold_3511_curated_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9374..10447
DNA (1074bp) protein (358aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YV94_9RHIZ
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:EIM27886.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Threonine dehydrogenase and related Zn-dependent dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3511_curated_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10458..11474)
DNA (1017bp) protein (339aa)
phosphate acetyltransferase; K00625 phosphate acetyltransferase [EC:2.3.1.8]
Phosphate acetyltransferase id=3983949 bin=GWC2_Chloroflexi_73_18 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_13
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11569..12714
DNA (1146bp) protein (382aa)
Citrate synthase id=3983948 bin=GWC2_Chloroflexi_73_18 species=Amphimedon queenslandica genus=Amphimedon taxon_order=Haplosclerida taxon_class=Demospongiae phylum=Porifera tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
citrate synthase 2-like
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_14
Meleagris gallopavo, Meleagris, Galliformes, Aves, Chordata, Metazoa

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comp(12774..13283)
DNA (510bp) protein (170aa)
Uncharacterized protein (Fragment) n=1 Tax=Meleagris gallopavo RepID=H9H2F7_MELGA
Uncharacterized protein {ECO:0000313|Ensembl:ENSMGAP00000018961}; Flags: Fragment;; TaxID=9103 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris.;" source="Meleagris gallopavo (Common turkey).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3511_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13459..14169)
DNA (711bp) protein (237aa)
putative branched-chain amino acid ABC transporter, ATP-binding component (EC:3.6.3.-)
ABC transporter-like protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UBX3_RHIRD
Branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:CDN94647.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_3511_curated_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14156..14800)
DNA (645bp) protein (215aa)
Inner-membrane translocator id=4836282 bin=GWC2_Methylomirabilis_70_16 species=Burkholderia glumae genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15064..15969)
DNA (906bp) protein (302aa)
Branched-chain amino acid ABC-type transport system, permease id=4836283 bin=GWC2_Methylomirabilis_70_16 species=Burkholderia glumae genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Branched-chain amino acid ABC-type transport system, permease
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15971..16705)
DNA (735bp) protein (245aa)
ABC transporter ATP-binding protein id=4836284 bin=GWC2_Methylomirabilis_70_16 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
branched-chain amino acid abc transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(16728..17459)
DNA (732bp) protein (244aa)
sulfate-transporting ATPase (EC:3.6.3.25); K01995 branched-chain amino acid transport system ATP-binding protein
HmgG id=4836285 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(17463..17894)
DNA (432bp) protein (144aa)
Branched-chain amino acid ABC transporter, permease protein id=4836286 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Veillonella taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
branched-chain amino acid abc transporter permease protein; K01998 branched-chain amino acid transport system permease protein
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18385..19263)
DNA (879bp) protein (293aa)
Branched-chain amino acid ABC-type transport system, permease components id=4836314 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
livH; High-affinity branched-chain amino acid transport system permease protein LivH
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19342..20544)
DNA (1203bp) protein (401aa)
putative ABC-transport systems periplasmic component precursor id=4836315 bin=GWC2_Methylomirabilis_70_16 species=Burkholderia ubonensis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_23
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21138..21845
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GW45_PUSST
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_24
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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21927..22775
DNA (849bp) protein (283aa)
TRAP transporter, 4TM/12TM fusion protein id=3668192 bin=GWC2_Syntrophus__56_31 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
TRAP transporter, 4TM/12TM fusion protein
Tax=GWC2_Syntrophus_56_31_curated
SCNpilot_expt_1000_bf_scaffold_3511_curated_25
unknown

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comp(23035..23250)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3511_curated_26
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23409..23600
DNA (192bp) protein (64aa)
TRAP transporter, 4TM/12TM fusion protein id=4656181 bin=GWF2_Methylomirabilis_70_14 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TRAP transporter, 4TM/12TM fusion protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
Displaying 26 items

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