ggKbase home page

SCNpilot_expt_1000_bf_scaffold_13733_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13733_curated_1
unknown

Not on your lists

comp(2..106)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13733_curated_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231..1181)
DNA (951bp) protein (317aa)
Polysaccharide deacetylase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFR3_9RHIZ
Polysaccharide deacetylase {ECO:0000313|EMBL:AHB49368.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_13733_curated_3
unknown

Not on your lists

comp(1515..1904)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000360221E
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:CPR21070.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_13733_curated_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2511..3623)
DNA (1113bp) protein (371aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
3-isopropylmalate dehydrogenase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370F1E2
SCNpilot_expt_1000_bf_scaffold_13733_curated_5
unknown

Not on your lists

comp(3742..3999)
DNA (258bp) protein (86aa)
Inositol monophosphatase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFL8_9RHIZ
Inositol monophosphatase {ECO:0000313|EMBL:CPR15008.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13733_curated_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4265..4405)
DNA (141bp) protein (47aa)
4-hydroxybenzoate polyprenyl transferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00188627}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00188633};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
4-hydroxybenzoate polyprenyl transferase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JT62_HYPDA
SCNpilot_expt_1000_bf_scaffold_13733_curated_7
unknown

Not on your lists

comp(4354..4959)
DNA (606bp) protein (202aa)
4-hydroxybenzoate polyprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate polyprenyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGF3_9RHIZ
4-hydroxybenzoate polyprenyltransferase {ECO:0000313|EMBL:CPR15012.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_13733_curated_8
unknown

Not on your lists

5430..5687
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13733_curated_9
unknown

Not on your lists

comp(5636..6379)
DNA (744bp) protein (248aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13733_curated_10
unknown

Not on your lists

6871..7179
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13733_curated_11
unknown

Not on your lists

8077..8292
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13733_curated_12
unknown

Not on your lists

comp(8563..9393)
DNA (831bp) protein (277aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13733_curated_13
Akkermansia muciniphila CAG:154, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9508..9783
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Akkermansia muciniphila CAG:154 RepID=R6K304_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDB56627.1}; TaxID=1263034 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia muciniphila CAG:154.;"
SCNpilot_expt_1000_bf_scaffold_13733_curated_14
unknown

Not on your lists

9796..9966
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13733_curated_15
unknown

Not on your lists

9967..10107
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13733_curated_16
unknown

Not on your lists

comp(11110..11205)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13733_curated_17
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12271..12705
DNA (435bp) protein (145aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Lipid A biosynthesis acyltransferase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYM3_HYPDA
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:ADJ23475.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Displaying 17 items

View Taxonomy