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SCNpilot_expt_1000_bf_scaffold_5358_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5358_curated_1
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(360..953)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003703FAF
50S ribosomal protein acetyltransferase {ECO:0000313|EMBL:BAQ15599.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
GCN5-like N-acetyltransferase
SCNpilot_expt_1000_bf_scaffold_5358_curated_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(992..1264)
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQA6_HYPDA
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_5358_curated_3
unknown

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comp(1334..1651)
DNA (318bp) protein (106aa)
50S ribosomal protein L21 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQA5_HYPDA
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
SCNpilot_expt_1000_bf_scaffold_5358_curated_4
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1893..2531
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZKM6_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86820.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_5358_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2609..3403
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037FC5EB
methyltransferase rbh
Putative methyltransferase {ECO:0000313|EMBL:CAE27056.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_expt_1000_bf_scaffold_5358_curated_6
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3420..3878)
DNA (459bp) protein (153aa)
Putative histone acetyltransferase (HAT) {ECO:0000313|EMBL:CCE06399.1}; EC=2.3.1.- {ECO:0000313|EMBL:CCE06399.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Putative histone acetyltransferase (HAT) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TIW1_9BRAD
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_5358_curated_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3922..4845)
DNA (924bp) protein (308aa)
hbdA; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:CCB68091.1}; EC=1.1.1.157 {ECO:0000313|EMBL:CCB68091.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003760BFD
SCNpilot_expt_1000_bf_scaffold_5358_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4871..5815)
DNA (945bp) protein (315aa)
electron transfer flavoprotein subunit beta n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000376A140
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:AHB47525.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_5358_curated_9
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6030..6515
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y8B4_KETVW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM42400.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_5358_curated_10
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6936..8141
DNA (1206bp) protein (402aa)
formyl-CoA transferase (EC:2.8.3.16)
Putative Formyl-CoA transferase {ECO:0000313|EMBL:CAQ72327.1}; EC=2.8.3.16 {ECO:0000313|EMBL:CAQ72327.1};; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
Putative Formyl-CoA transferase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3RBQ2_CUPTR
SCNpilot_expt_1000_bf_scaffold_5358_curated_11
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8744..9028
DNA (285bp) protein (95aa)
Porin n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U6J6_SINMW
porin
Porin {ECO:0000313|EMBL:ABR59276.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_5358_curated_12
unknown

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comp(9095..10129)
DNA (1035bp) protein (345aa)
Tyrosine recombinase XerC n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7G6_9RHIZ
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808, ECO:0000313|EMBL:CPR17164.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
integrase family protein
Displaying 12 items

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