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SCNpilot_expt_1000_bf_scaffold_7921_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7921_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..166
DNA (165bp) protein (55aa)
3-oxoacyl-(acyl carrier protein) synthase III (EC:2.3.1.180)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
3-oxoacyl-ACP synthase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380B763
SCNpilot_expt_1000_bf_scaffold_7921_curated_2
unknown

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329..646
DNA (318bp) protein (106aa)
transcriptional regulator n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036F0106
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
SCNpilot_expt_1000_bf_scaffold_7921_curated_3
unknown

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726..1253
DNA (528bp) protein (176aa)
MerR family transcriptional regulator n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGM6_9RHIZ
MerR family transcriptional regulator {ECO:0000313|EMBL:CPR20500.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
MerR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7921_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1257..2006
DNA (750bp) protein (250aa)
phosphopantetheinyl transferase-like protein; K06133 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SK06_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB50450.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_7921_curated_5
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2464..2847
DNA (384bp) protein (128aa)
Putative nitroreductase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPD6_9PROT
Nitrobenzoate reductase {ECO:0000313|EMBL:KDR36808.1}; TaxID=1071679 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
nitroreductase
SCNpilot_expt_1000_bf_scaffold_7921_curated_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2853..3155)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHJ1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27924.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7921_curated_7
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3142..3714)
DNA (573bp) protein (191aa)
Acetyltransferase (GNAT) family protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QMP3_9BRAD
N-acetyltransferase GCN5 {ECO:0000313|EMBL:ETR76784.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative acetyltransferase
SCNpilot_expt_1000_bf_scaffold_7921_curated_8
unknown

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comp(3677..3934)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7921_curated_9
unknown

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comp(4069..4233)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7921_curated_10
unknown

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comp(4798..5010)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7921_curated_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5058..5489
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037CC776
lysine exporter LysE/YggA
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:ADJ23791.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_7921_curated_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5493..5900)
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JPQ5_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ23789.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_7921_curated_13
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6603..6902
DNA (300bp) protein (100aa)
catechol 1,2-dioxygenase (EC:1.13.11.1); K03381 catechol 1,2-dioxygenase [EC:1.13.11.1]
Putative dioxygenase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PPN6_9RHIZ
Putative dioxygenase {ECO:0000313|EMBL:EJT01938.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
Displaying 13 items

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