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SCNpilot_expt_1000_bf_scaffold_5483_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5483_curated_1
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..151)
DNA (150bp) protein (50aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QKV4_9RHOB
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:EPX80228.1}; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae DSM 19593.;"
antibiotic biosynthesis monooxygenase; K07145
SCNpilot_expt_1000_bf_scaffold_5483_curated_2
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(148..471)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. CCS2 RepID=A4ENI2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KAJ04066.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5483_curated_3
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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619..1086
DNA (468bp) protein (156aa)
Glutathione-dependent formaldehyde-activating GFA n=1 Tax=Rhodobacter sp. SW2 RepID=C8RYR7_9RHOB
Glutathione-dependent formaldehyde-activating GFA {ECO:0000313|EMBL:EEW26255.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5483_curated_4
unknown

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1100..1819
DNA (720bp) protein (240aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5483_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1876..2733
DNA (858bp) protein (286aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiace
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SE95_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5483_curated_6
unknown

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comp(3756..4394)
DNA (639bp) protein (213aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5483_curated_7
unknown

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5019..5807
DNA (789bp) protein (263aa)
Inositol-1-monophosphatase {ECO:0000313|EMBL:CPR15110.1}; EC=3.1.3.25 {ECO:0000313|EMBL:CPR15110.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol monophosphatase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSF4_HYPDA
SCNpilot_expt_1000_bf_scaffold_5483_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6281..7003
DNA (723bp) protein (241aa)
MotA/TolQ/ExbB proton channel family n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSF5_HYPDA
MotA/TolQ/ExbB proton channel family
MotA/TolQ/ExbB proton channel family {ECO:0000313|EMBL:ADJ24249.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_5483_curated_9
unknown

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comp(7214..7570)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5483_curated_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7799..8035
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037E3071
Uncharacterized protein {ECO:0000313|EMBL:AHB49473.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5483_curated_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8265..8717
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000365F184
Fur family transcriptional regulator {ECO:0000313|EMBL:AHB47289.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Fur family ferric uptake regulator
SCNpilot_expt_1000_bf_scaffold_5483_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8807..9925)
DNA (1119bp) protein (373aa)
Extracellular solute-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JYC4_9PROT
dctP; TRAP dicarboxylate transporter subunit DctP
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_5483_curated_13
unknown

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comp(10149..11180)
DNA (1032bp) protein (344aa)
KpsF/GutQ family protein (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
KpsF/GutQ family protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JTD7_HYPDA
Uncharacterized phosphosugar isomerase aq_1546 {ECO:0000313|EMBL:CPR19760.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_5483_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11402..11785
DNA (384bp) protein (128aa)
Endoribonuclease L-PSP n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSX4_9RHIZ
Endoribonuclease L-PSP {ECO:0000313|EMBL:EHK56200.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
endoribonuclease L-PSP
Displaying 14 items

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