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SCNpilot_expt_1000_bf_scaffold_3801_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3801_curated_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..204
DNA (204bp) protein (68aa)
glutathione S-transferase (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase Gst {ECO:0000313|EMBL:AEI05828.1}; EC=2.5.1.18 {ECO:0000313|EMBL:AEI05828.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Glutathione S-transferase n=2 Tax=Oligotropha carboxidovorans RepID=B6JF16_OLICO
SCNpilot_expt_1000_bf_scaffold_3801_curated_2
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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445..951
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SYT5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD99362.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3801_curated_3
unknown

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comp(948..1106)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3801_curated_4
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1111..2382)
DNA (1272bp) protein (424aa)
Major facilitator superfamily MFS_1 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TP34_9PROT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EDP65113.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_3801_curated_5
RLO_PLX_64_10, Bacteria

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comp(2372..3145)
DNA (774bp) protein (258aa)
hpch/hpai aldolase; K01630 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA536-G10 RepID=UPI00037CA540
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SCNpilot_expt_1000_bf_scaffold_3801_curated_6
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3213..3791)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI000373EFC9
Uncharacterized protein {ECO:0000313|EMBL:ETW98192.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
thiamine pyrophosphate enzyme-like protein
SCNpilot_expt_1000_bf_scaffold_3801_curated_7
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4036..4875
DNA (840bp) protein (280aa)
Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZN1_RHOVT
Membrane protein {ECO:0000313|EMBL:KAI94640.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3801_curated_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5211..6002
DNA (792bp) protein (264aa)
short-chain dehydrogenase/reductase SDR; K07535 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RY24_FERPA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_3801_curated_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6699..7190
DNA (492bp) protein (164aa)
acyl-CoA dehydrogenase domain-containing protein; K00257 [EC:1.3.99.-]
butyryl-CoA dehydrogenase n=1 Tax=Janthinobacterium lividum RepID=UPI000289C22D
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SCNpilot_expt_1000_bf_scaffold_3801_curated_10
unknown

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comp(8205..8516)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3801_curated_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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9039..10496
DNA (1458bp) protein (486aa)
2-methylcitrate dehydratase n=1 Tax=Rhodococcus opacus RepID=UPI00029CB300
MmgE/PrpD family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_3801_curated_12
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10571..10960
DNA (390bp) protein (130aa)
hypothetical protein; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
Carboxymuconolactone decarboxylase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G374_9BRAD
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:BAL75211.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_1000_bf_scaffold_3801_curated_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10953..11867
DNA (915bp) protein (305aa)
6-phosphogluconate dehydrogenase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B483E8
Uncharacterized protein {ECO:0000313|EMBL:EKS31918.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative 6-phosphogluconate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3801_curated_14
unknown

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comp(12218..12616)
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3801_curated_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13295..14677
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000373D549
MmgE/PrpD family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_3801_curated_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14754..15731
DNA (978bp) protein (326aa)
Putative uptake protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I7W9_AZOC5
uptake protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_3801_curated_17
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15859..16221
DNA (363bp) protein (121aa)
Small permease component of tripartite tricarboxylate transporter n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SV64_JANMA
tctB4; small permease of tripartite tricarboxylate transporter
Small permease component of tripartite tricarboxylate transporter {ECO:0000313|EMBL:ABR91100.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
Displaying 17 items

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