ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1890_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1890_curated_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1986
DNA (1986bp) protein (662aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
GAF sensor hybrid histidine kinase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5V2_9RHIZ
GAF sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_1890_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2156..3847
DNA (1692bp) protein (564aa)
Signal transduction histidine kinase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5C3_HYPSM
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:CCB65841.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1890_curated_3
unknown

Not on your lists

comp(3868..3978)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1890_curated_4
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4229..4930
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RMQ9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR27311.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
SH3, type 3
SCNpilot_expt_1000_bf_scaffold_1890_curated_5
Vibrio mimicus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5135..6850
DNA (1716bp) protein (572aa)
Glucans biosynthesis protein G n=4 Tax=Vibrio mimicus RepID=D2YB21_VIBMI
Glucans biosynthesis protein G {ECO:0000256|HAMAP-Rule:MF_01069}; Flags: Precursor;; TaxID=671074 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio mimicus VM603.;"
Glucans biosynthesis protein G precursor; K03670 periplasmic glucans biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_1890_curated_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6847..8652
DNA (1806bp) protein (602aa)
glucosyltransferase MdoH; K03669 membrane glycosyltransferase [EC:2.4.1.-]
Glucosyltransferase MdoH n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYJ6_HYPDA
Glucosyltransferase MdoH {ECO:0000313|EMBL:ADJ23448.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_1890_curated_7
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9005..9808)
DNA (804bp) protein (268aa)
Putative integral membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVU6_9RHIZ
Cytochrome C oxidase subunit I {ECO:0000313|EMBL:KFG69046.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
cytochrome c oxidase subunit I
SCNpilot_expt_1000_bf_scaffold_1890_curated_8
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10200..11159
DNA (960bp) protein (320aa)
Putative LysR family transcriptional regulator n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9SCE9_9RHOB
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:EPX83919.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1890_curated_9
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11333..12352
DNA (1020bp) protein (340aa)
Putative ABC transporter, periplasmic protein n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9S116_9RHOB
Putative ABC transporter, periplasmic protein {ECO:0000313|EMBL:EPX83920.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
tauA; nitrate/sulfonate/bicarbonate ABC transporter; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1890_curated_10
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12349..13050
DNA (702bp) protein (234aa)
isochorismatase family protein; K09020 ureidoacrylate peracid hydrolase [EC:3.5.1.110]
Putative amidohydrolase RutB n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QR82_9RHOB
Putative amidohydrolase RutB {ECO:0000313|EMBL:EPX83921.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
SCNpilot_expt_1000_bf_scaffold_1890_curated_11
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13082..13471
DNA (390bp) protein (130aa)
Putative ring-opening amidohydrolase RutC n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QWE3_9RHOB
Putative ring-opening amidohydrolase RutC {ECO:0000313|EMBL:EPX83922.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
pyrimidine utilization protein C; K09021 aminoacrylate peracid reductase
SCNpilot_expt_1000_bf_scaffold_1890_curated_12
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13491..14291
DNA (801bp) protein (267aa)
Hydroxymethylpyrimidine ABC transporter, transmembrane component n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QWD0_9RHOB
Hydroxymethylpyrimidine ABC transporter, transmembrane component {ECO:0000313|EMBL:EPX83923.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
binding-protein-dependent transporter inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1890_curated_13
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14301..15101
DNA (801bp) protein (267aa)
Putative aminoacrylate hydrolase RutD {ECO:0000256|SAAS:SAAS00023219}; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00023215};; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
hydrolase; K09023 aminoacrylate hydrolase [EC:3.5.1.-]
Putative hydrolase or acyltransferase RutD n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9SCF4_9RHOB
SCNpilot_expt_1000_bf_scaffold_1890_curated_14
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15098..15910
DNA (813bp) protein (271aa)
Hydroxymethylpyrimidine ABC transporter, ATPase component n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9S122_9RHOB
Hydroxymethylpyrimidine ABC transporter, ATPase component {ECO:0000313|EMBL:EPX83925.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1890_curated_15
unknown

Not on your lists

comp(16080..16223)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 15 items

View Taxonomy