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SCNpilot_cont_1000_p_scaffold_1882_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1882_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..545)
DNA (543bp) protein (181aa)
Classical-complement-pathway C3/C5 convertase {ECO:0000313|EMBL:ABS61637.1}; EC=3.4.21.43 {ECO:0000313|EMBL:ABS61637.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Classical-complement-pathway C3/C5 convertase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP04_PARL1
Classical-complement-pathway C3/C5 convertase; K07152
SCNpilot_cont_1000_p_scaffold_1882_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

592..1974
DNA (1383bp) protein (461aa)
integral membrane sensor signal transduction histidine kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP07_PARL1
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABS61640.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1882_curated_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2040..2573
DNA (534bp) protein (178aa)
Transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I230_AZOC5
transcriptional regulator; K15012 two-component system, response regulator RegA
Transcriptional regulator {ECO:0000313|EMBL:BAF90691.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_1000_p_scaffold_1882_curated_4
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2574..2939)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2HB88_9CAUL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ69504.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_1882_curated_5
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2953..3492)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI000380F798
hypothetical protein
Transcription elongation factor {ECO:0000313|EMBL:CDO58236.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
SCNpilot_cont_1000_p_scaffold_1882_curated_6
unknown

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comp(3514..4143)
DNA (630bp) protein (210aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1882_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4159..4746)
DNA (588bp) protein (196aa)
imidazoleglycerol-phosphate dehydratase; K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
Imidazoleglycerol-phosphate dehydratase {ECO:0000255|HAMAP-Rule:MF_00076}; Short=IGPD {ECO:0000255|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000255|HAMAP-Rule:MF_00076};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=HIS7_PARL1 rbh
SCNpilot_cont_1000_p_scaffold_1882_curated_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4938..6128
DNA (1191bp) protein (397aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]
S-adenosylmethionine synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCY7_9RHOB
SCNpilot_cont_1000_p_scaffold_1882_curated_9
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6157..6933)
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MFC8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:BAO88794.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
hypothetical protein; K07090
SCNpilot_cont_1000_p_scaffold_1882_curated_10
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7009..7755
DNA (747bp) protein (249aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
trmB; tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z4B8_AZOL4
SCNpilot_cont_1000_p_scaffold_1882_curated_11
unknown

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7801..8049
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1882_curated_12
Parvularcula bermudensis, Parvularcula, Parvularculales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8191..8718
DNA (528bp) protein (176aa)
Ribosome maturation factor RimP n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TEQ0_PARBH
hypothetical protein; K09748 ribosome maturation factor RimP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=314260 species="Bacteria; Proteobacteria; Alphaproteobacteria; Parvularculales; Parvularculaceae; Parvularcula.;" source="Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC; 12087).;"
SCNpilot_cont_1000_p_scaffold_1882_curated_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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8720..10342
DNA (1623bp) protein (541aa)
NusA antitermination factor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ91_PARL1
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NusA antitermination factor; K02600 N utilization substance protein A
SCNpilot_cont_1000_p_scaffold_1882_curated_14
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10381..10986
DNA (606bp) protein (202aa)
DNA-binding protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000372DE36
hypothetical protein; K07742 hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_cont_1000_p_scaffold_1882_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10996..13518
DNA (2523bp) protein (841aa)
Translation initiation factor IF-2 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=IF2_PARL1 rbh
translation initiation factor IF-2; K02519 translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1882_curated_16
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13673..14086
DNA (414bp) protein (138aa)
Ribosome-binding factor A n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RBFA_PHEZH
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
Ribosome-binding factor A {ECO:0000255|HAMAP-Rule:MF_00003}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_1000_p_scaffold_1882_curated_17
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14147..15094
DNA (948bp) protein (316aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=alpha proteobacterium BAL199 RepID=A8TYZ8_9PROT
SCNpilot_cont_1000_p_scaffold_1882_curated_18
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15110..15376
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=1 Tax=Methyloferula stellata RepID=UPI00036F35E9
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_cont_1000_p_scaffold_1882_curated_19
bacterium YEK0313, Bacteria

Not on your lists

15564..17702
DNA (2139bp) protein (713aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
polynucleotide phosphorylase n=1 Tax=Methylopila sp. M107 RepID=UPI000362CFC9
SCNpilot_cont_1000_p_scaffold_1882_curated_20
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17776..18237
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HNE7_9RHIZ
hypothetical protein
Transcriptional regulator {ECO:0000313|EMBL:KER72469.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
SCNpilot_cont_1000_p_scaffold_1882_curated_21
unknown

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18289..18588
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1882_curated_22
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18703..19281)
DNA (579bp) protein (193aa)
ATP:cob(I)alamin adenosyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J5H2_9PROT
ATP:cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:EKE78296.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
meaD; ATP:cob(I)alamin adenosyltransferase
SCNpilot_cont_1000_p_scaffold_1882_curated_23
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19371..19550
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RC83_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:GAM96689.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1882_curated_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19547..22414
DNA (2868bp) protein (956aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I {ECO:0000313|EMBL:ABS61728.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABS61728.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
DNA polymerase I n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP95_PARL1
SCNpilot_cont_1000_p_scaffold_1882_curated_25
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22560..24302)
DNA (1743bp) protein (581aa)
Putative uncharacterized protein n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0ATL8_MARMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI64369.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_cont_1000_p_scaffold_1882_curated_26
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24338..25129)
DNA (792bp) protein (264aa)
Adenylyltransferase and sulfurtransferase MOCS3 n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S5L4_9PROT
moeB; molybdopterin biosynthesis protein MoeB
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
SCNpilot_cont_1000_p_scaffold_1882_curated_27
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25345..26823
DNA (1479bp) protein (493aa)
phosphoenolpyruvate carboxykinase; K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000255|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000255|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000255|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000255|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000255|HAMAP-Rule:MF_00453};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=PCKA_PARL1 rbh
Displaying 27 items

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