ggKbase home page

SCNpilot_cont_1000_p_scaffold_1665_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1665_curated_1
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73..831
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034AB3C9
type 11 SAM-dependent methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_cont_1000_p_scaffold_1665_curated_2
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

828..2087
DNA (1260bp) protein (420aa)
Putative uncharacterized protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FZC0_9CYAN
Putative uncharacterized protein {ECO:0000313|EMBL:CBN55710.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
SCNpilot_cont_1000_p_scaffold_1665_curated_3
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

comp(2084..2836)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BL30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD66510.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
type 11 methyltransferase
SCNpilot_cont_1000_p_scaffold_1665_curated_4
CG_Mariprof_02, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2833..3780)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VLC8_RHILT
hypothetical protein
Tax=CG_Mariprof_02
SCNpilot_cont_1000_p_scaffold_1665_curated_5
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4002..5195
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I2A9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC34240.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1665_curated_6
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5246..6316
DNA (1071bp) protein (357aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47]
GDP-mannose 4,6-dehydratase n=1 Tax=Azospirillum brasilense RepID=Q6QW93_AZOBR
SCNpilot_cont_1000_p_scaffold_1665_curated_7
unknown

Not on your lists

6377..7822
DNA (1446bp) protein (482aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1665_curated_8
Shewanella sp. HN-41, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7847..8758)
DNA (912bp) protein (304aa)
Lipopolysaccharide biosynthesis n=1 Tax=Shewanella sp. HN-41 RepID=F7RQS0_9GAMM
Lipopolysaccharide biosynthesis {ECO:0000313|EMBL:EGM69254.1}; TaxID=327275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. HN-41.;"
lipopolysaccharide biosynthesis protein
SCNpilot_cont_1000_p_scaffold_1665_curated_9
unknown

Not on your lists

8923..10293
DNA (1371bp) protein (457aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1665_curated_10
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10514..11815)
DNA (1302bp) protein (434aa)
O-antigen and teichoic acid-like export protein n=2 Tax=Rhodospirillum rubrum RepID=G2TAM8_RHORU
O-antigen and teichoic acid-like export protein
Membrane protein involved in the export of O-antigen and teichoic acid-like {ECO:0000313|EMBL:ABC23888.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_cont_1000_p_scaffold_1665_curated_11
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12202..13332)
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase id=2514102 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter capsulatus genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
SCNpilot_cont_1000_p_scaffold_1665_curated_12
unknown

Not on your lists

13587..14999
DNA (1413bp) protein (471aa)
capsular polysaccharide biosynthesis protein n=1 Tax=Pseudomonas fuscovaginae RepID=UPI000288FC82
Undecaprenyl-phosphate glucose phosphotransferase {ECO:0000313|EMBL:CPR20667.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
SCNpilot_cont_1000_p_scaffold_1665_curated_13
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15019..15840
DNA (822bp) protein (274aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TIF8_TISMK
Epimerase {ECO:0000313|EMBL:EWY40022.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hldD; NAD-dependent epimerase/dehydratase
SCNpilot_cont_1000_p_scaffold_1665_curated_14
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15825..16796
DNA (972bp) protein (324aa)
MUM4 (Mucilage-modified 4) n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TIF7_TISMK
MUM4 (mucilage-modified 4)
MUM4 (Mucilage-modified 4) {ECO:0000313|EMBL:AFK52545.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_1000_p_scaffold_1665_curated_15
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16780..17835)
DNA (1056bp) protein (352aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037FE25B
SCNpilot_cont_1000_p_scaffold_1665_curated_16
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17869..18354)
DNA (486bp) protein (162aa)
GDP-mannose mannosyl hydrolase (EC:3.6.1.-); K03207 colanic acid biosynthesis protein WcaH [EC:3.6.1.-]
NUDIX hydrolase n=1 Tax=Burkholderia graminis C4D1M RepID=B1FW73_9BURK
NUDIX hydrolase {ECO:0000313|EMBL:EDT11649.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
SCNpilot_cont_1000_p_scaffold_1665_curated_17
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18421..19872)
DNA (1452bp) protein (484aa)
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (EC:2.7.7.13); K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] id=12497145 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:EWY40466.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Displaying 17 items

View Taxonomy