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SCNpilot_cont_1000_p_scaffold_8162_curated

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_8162_curated_1
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..896)
DNA (894bp) protein (298aa)
Response regulator receiver protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPM5_PARL1
Type II/IV secretion system ATPase TadZ/CpaE,associated with Flp pilus assembly {ECO:0000313|EMBL:CDO59908.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
response regulator receiver protein; K02282 pilus assembly protein CpaE
SCNpilot_cont_1000_p_scaffold_8162_curated_2

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comp(970..1659)
DNA (690bp) protein (230aa)
Type IV pili component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KT61_MESAW
Uncharacterized protein {ECO:0000313|EMBL:KKN87155.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
type IV pili component
SCNpilot_cont_1000_p_scaffold_8162_curated_3
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1669..3219)
DNA (1551bp) protein (517aa)
pilus assembly protein CpaC n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI00037EA25C
Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly {ECO:0000313|EMBL:CDO59910.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
type II and III secretion system protein; K02280 pilus assembly protein CpaC
SCNpilot_cont_1000_p_scaffold_8162_curated_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3216..4031)
DNA (816bp) protein (272aa)
Flp pilus assembly CpaB n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZ67_RHOP2
CtpC protein {ECO:0000313|EMBL:KIZ45147.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Flp pilus assembly CpaB; K02279 pilus assembly protein CpaB
SCNpilot_cont_1000_p_scaffold_8162_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4135..4644)
DNA (510bp) protein (170aa)
peptidase A24A prepilin type IV; K02278 prepilin peptidase CpaA [EC:3.4.23.43]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D693BE
Peptidase A24A prepilin type IV {ECO:0000313|EMBL:ADU43290.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_1000_p_scaffold_8162_curated_6
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4748..4909)
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UFJ7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP90654.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
Flp/Fap pilin component; K02651 pilus assembly protein Flp/PilA
Displaying 6 items

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