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SCNpilot_cont_1000_p_scaffold_3270_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3270_curated_1
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..414)
DNA (414bp) protein (138aa)
glycoside hydrolase family 29 (alpha-L-fucosidase); K01206 alpha-L-fucosidase [EC:3.2.1.51]
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4PI56_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ85050.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
SCNpilot_cont_1000_p_scaffold_3270_curated_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(422..1477)
DNA (1056bp) protein (352aa)
esterase id=12554022 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
esterase
Putative esterase {ECO:0000313|EMBL:ABJ83978.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_cont_1000_p_scaffold_3270_curated_3
unknown

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comp(1544..1876)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3270_curated_4
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1873..2106)
DNA (234bp) protein (78aa)
Cation/multidrug efflux pump n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W646_MAGSA
cation/multidrug efflux pump
Cation/multidrug efflux pump {ECO:0000313|EMBL:BAE50679.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_cont_1000_p_scaffold_3270_curated_5
unknown

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2744..2884
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3270_curated_6
unknown

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3113..3412
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3270_curated_7
Akkermansia muciniphila CAG:154, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3632..4027
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Akkermansia muciniphila CAG:154 RepID=R6K304_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDB56627.1}; TaxID=1263034 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia muciniphila CAG:154.;"
SCNpilot_cont_1000_p_scaffold_3270_curated_8
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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3979..5196
DNA (1218bp) protein (406aa)
Tax=RBG_16_Gamma2_64_10_curated
SCNpilot_cont_1000_p_scaffold_3270_curated_9
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5048..6283)
DNA (1236bp) protein (412aa)
Membrane-fusion protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W645_MAGSA
membrane-fusion protein
Membrane-fusion protein {ECO:0000313|EMBL:BAE50680.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_cont_1000_p_scaffold_3270_curated_10
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6393..7001
DNA (609bp) protein (203aa)
Transcriptional regulator, TetR family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UI32_METS4
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACA15864.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_1000_p_scaffold_3270_curated_11
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7007..7777
DNA (771bp) protein (257aa)
short-chain dehydrogenase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00036F33E1
Putative short-chain dehydrogenase/reductase SDR family {ECO:0000313|EMBL:AJK50542.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
daunorubicin C-13 ketoreductase
SCNpilot_cont_1000_p_scaffold_3270_curated_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7933..8217)
DNA (285bp) protein (95aa)
Transcriptional regulator, ArsR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2G4_9BRAD
Putative HTH-type transcriptional regulator YgaV {ECO:0000313|EMBL:CEG07392.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ArsR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_3270_curated_13
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8416..8928
DNA (513bp) protein (171aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QJC4_METSZ
protein-tyrosine phosphatase
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:CCJ08961.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_1000_p_scaffold_3270_curated_14
Anabaena sp. 90, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

9013..10035
DNA (1023bp) protein (341aa)
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.-)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=46234 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena sp. 90.;"
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Leptolyngbya boryana RepID=UPI000382E9C3
SCNpilot_cont_1000_p_scaffold_3270_curated_15
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10035..11282
DNA (1248bp) protein (416aa)
Major facilitator superfamily MFS_1 n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HV09_CYAP4
MFS transporter permease {ECO:0000313|EMBL:AJF07022.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
major facilitator superfamily protein
SCNpilot_cont_1000_p_scaffold_3270_curated_16
unknown

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11509..12393
DNA (885bp) protein (295aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3270_curated_17

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comp(12397..13422)
DNA (1026bp) protein (342aa)
Phosphate-binding periplasmic protein (PBP) n=1 Tax=mine drainage metagenome RepID=E6QAW9_9ZZZZ
Phosphate-binding periplasmic protein (PBP) {ECO:0000313|EMBL:CBI04345.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_cont_1000_p_scaffold_3270_curated_18
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13968..15074
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003058F3F
Uncharacterized protein {ECO:0000313|EMBL:AIF48602.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3270_curated_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(15071..16525)
DNA (1455bp) protein (485aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF72_9BACT
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_1000_p_scaffold_3270_curated_20
Leptotrichia sp. oral taxon 879, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(16525..16659)
DNA (135bp) protein (45aa)
PhoB family transcriptional regulator n=1 Tax=Leptotrichia shahii RepID=UPI0003705071
Putative transcriptional activator protein IrlR {ECO:0000313|EMBL:ERK52968.1}; TaxID=1227268 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia sp. oral taxon 879 str. F0557.;"
two component transcriptional regulator
Displaying 20 items

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