ggKbase home page

SCNpilot_cont_1000_p_scaffold_1687_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1687_curated_1
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..749)
DNA (747bp) protein (249aa)
Putative polysaccharide biosynthesis protein n=1 Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4NCM5_KITSK
putative polysaccharide biosynthesis protein
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
SCNpilot_cont_1000_p_scaffold_1687_curated_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(742..1713)
DNA (972bp) protein (324aa)
Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QD72_DESAH
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
SCNpilot_cont_1000_p_scaffold_1687_curated_3
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1802..3343
DNA (1542bp) protein (514aa)
carbohydrate kinase; K00854 xylulokinase [EC:2.7.1.17] rbh
Carbohydrate kinase, FGGY family n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O28945_ARCFU rbh
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
SCNpilot_cont_1000_p_scaffold_1687_curated_4
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3353..3967
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FL66_9RHIZ
conserved membrane protein of unknown function
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
SCNpilot_cont_1000_p_scaffold_1687_curated_5
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3980..5422)
DNA (1443bp) protein (481aa)
Cyclic peptide transporter n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZYK3_OPITP
Uncharacterized protein {ECO:0000313|EMBL:KHD09193.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
cyclic peptide transporter; K06160 putative ATP-binding cassette transporter
SCNpilot_cont_1000_p_scaffold_1687_curated_6
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5616..6371)
DNA (756bp) protein (252aa)
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
SCNpilot_cont_1000_p_scaffold_1687_curated_7
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6495..7700)
DNA (1206bp) protein (402aa)
3-oxoacyl-[acyl-carrier-protein] synthase II {ECO:0000313|EMBL:ABC20850.1}; EC=2.3.1.41 {ECO:0000313|EMBL:ABC20850.1};; Flags: Precursor;; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
3-oxoacyl-[acyl-carrier-protein] synthase II n=2 Tax=Rhodospirillum rubrum RepID=G2TGF0_RHORU
3-oxoacyl-ACP synthase
SCNpilot_cont_1000_p_scaffold_1687_curated_8
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7747..8112)
DNA (366bp) protein (122aa)
Acyl carrier protein n=2 Tax=Rhodospirillum rubrum RepID=G2TGE9_RHORU
acyl carrier protein; K02078 acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_cont_1000_p_scaffold_1687_curated_9
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8309..9223
DNA (915bp) protein (305aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
Sulfate adenylyltransferase subunit 2 n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KTD6_MESAW
sulfate adenylyltransferase, small subunit
SCNpilot_cont_1000_p_scaffold_1687_curated_10
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9223..11106
DNA (1884bp) protein (628aa)
Adenylylsulfate kinase {ECO:0000313|EMBL:ESQ81561.1}; EC=2.7.1.25 {ECO:0000313|EMBL:ESQ81561.1};; EC=2.7.7.4 {ECO:0000313|EMBL:ESQ81561.1};; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00035DB2D3
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase
SCNpilot_cont_1000_p_scaffold_1687_curated_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11119..12093)
DNA (975bp) protein (325aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TT36_PHAFV
Uncharacterized protein {ECO:0000313|EMBL:AIB11348.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
UDP-glucose/glucuronate epimerase
SCNpilot_cont_1000_p_scaffold_1687_curated_12
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12103..13380)
DNA (1278bp) protein (426aa)
NDP-sugar dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-]
NDP-sugar dehydrogenase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GTU8_THISH
NDP-sugar dehydrogenase {ECO:0000313|EMBL:ACL73192.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_cont_1000_p_scaffold_1687_curated_13
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13476..14828)
DNA (1353bp) protein (451aa)
UDP-glucose 6-dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
UDP-glucose 6-dehydrogenase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U357_9PROT
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:EDP61411.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_cont_1000_p_scaffold_1687_curated_14
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15086..16177
DNA (1092bp) protein (364aa)
Flagellin modification protein FlmA n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UE12_9RHOB
Flagellin modification protein FlmA {ECO:0000313|EMBL:EAP91493.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
polysaccharide biosynthesis protein CapD
SCNpilot_cont_1000_p_scaffold_1687_curated_15
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16170..17105
DNA (936bp) protein (312aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NHE8_ROSCS
DegT/DnrJ/EryC1/StrS aminotransferase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
SCNpilot_cont_1000_p_scaffold_1687_curated_16
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17084..17404
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. 3_1_syn3 RepID=D9YCD3_9DELT
DegT/DnrJ/EryC1/StrS aminotransferase family protein
Uncharacterized protein {ECO:0000313|EMBL:EGW51060.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
SCNpilot_cont_1000_p_scaffold_1687_curated_17
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17414..18256)
DNA (843bp) protein (281aa)
Uncharacterized protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=Q9A2I5_CAUCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK25538.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_1000_p_scaffold_1687_curated_18
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18249..19382)
DNA (1134bp) protein (378aa)
Oxidoreductase, FAD-binding family protein n=1 Tax=Pseudomonas stutzeri CCUG 29243 RepID=I4CN49_PSEST
FAD-dependent oxidoreductase {ECO:0000313|EMBL:AJC17799.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
oxidoreductase, FAD-binding family protein
SCNpilot_cont_1000_p_scaffold_1687_curated_19
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19379..20089)
DNA (711bp) protein (237aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VM71_RHOPX
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:ETR76517.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
fumarylacetoacetate (FAA) hydrolase
SCNpilot_cont_1000_p_scaffold_1687_curated_20
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

20173..20604
DNA (432bp) protein (144aa)
Protein TolA id=3805819 bin=GWC2_Planctomycetes_45_44 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
hypothetical protein
Tax=GWC2_Planctomycetes_45_44_curated
SCNpilot_cont_1000_p_scaffold_1687_curated_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20646..22754)
DNA (2109bp) protein (703aa)
ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
ATP-dependent DNA helicase RecG n=1 Tax=Oceanibaculum indicum P24 RepID=K2J7K8_9PROT
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EKE70917.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_cont_1000_p_scaffold_1687_curated_22

Not on your lists

22889..24400
DNA (1512bp) protein (504aa)
phosphoglucomutase/phosphomannomutase subunit alpha/beta; K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
Phosphoglucosamine mutase n=1 Tax=uncultured bacterium BLR9 RepID=C0INB9_9BACT
Phosphoglucosamine mutase {ECO:0000313|EMBL:ACN58805.1}; TaxID=506525 species="Bacteria; environmental samples.;" source="uncultured bacterium BLR9.;"
SCNpilot_cont_1000_p_scaffold_1687_curated_23
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24415..24738
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI00036FB550
Uncharacterized protein {ECO:0000313|EMBL:KCZ58035.1}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlantica.;"
hypothetical protein; K09159 hypothetical protein
SCNpilot_cont_1000_p_scaffold_1687_curated_24
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24739..25023
DNA (285bp) protein (95aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9RPS9_9RHOB
Displaying 24 items

View Taxonomy