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SCNpilot_cont_1000_p_scaffold_4588_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_4588_curated_1
unknown

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1..156
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4588_curated_2
unknown

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302..802
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4588_curated_3
unknown

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comp(814..1008)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4588_curated_4
Leptospira wolffii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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1154..1441
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000366D736
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EPG65405.1}; TaxID=1193069 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira wolffii serovar Khorat str. Khorat-H2.;"
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_4588_curated_5
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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1528..2280
DNA (753bp) protein (251aa)
oxidoreductase, short chain dehydrogenase/reductase family; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
oxidoreductase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B2F7E7
Oxidoreductase, short chain dehydrogenase/reductase family {ECO:0000313|EMBL:ACO32221.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
SCNpilot_cont_1000_p_scaffold_4588_curated_6
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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2348..3052
DNA (705bp) protein (235aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Citreicella sp. SE45 RepID=D0DBU4_9RHOB
Short-chain dehydrogenase/reductase SDR
Tax=RBG_16_Acidobacteria_68_9_curated
SCNpilot_cont_1000_p_scaffold_4588_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3138..4637
DNA (1500bp) protein (500aa)
FAD dependent oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU92_PARL1
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABS63475.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_4588_curated_8
unknown

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4634..4978
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4588_curated_9
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5283..5864)
DNA (582bp) protein (194aa)
Putative Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TCB9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFZ89752.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
isoprenylcysteine carboxyl methyltransferase family protein
SCNpilot_cont_1000_p_scaffold_4588_curated_10
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5908..6975)
DNA (1068bp) protein (356aa)
Transcriptional regulator, MerR family protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INZ7_RHOCS
transcriptional regulator, MerR family protein
Transcriptional regulator, MerR family protein {ECO:0000313|EMBL:ACI99417.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_cont_1000_p_scaffold_4588_curated_11
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7177..8868)
DNA (1692bp) protein (564aa)
Para-aminobenzoate synthase, component I n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S6H2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KKC31598.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
para-aminobenzoate synthase, component I
SCNpilot_cont_1000_p_scaffold_4588_curated_12
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8988..9404
DNA (417bp) protein (139aa)
Heat shock protein Hsp20 n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HKN9_GLUDA
small heat shock protein ibpA
Heat shock protein Hsp20 {ECO:0000313|EMBL:ACI50137.1}; Putative small heat shock protein ibpA {ECO:0000313|EMBL:CAP56065.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_1000_p_scaffold_4588_curated_13
unknown

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9401..9652
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4588_curated_14
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9753..10502
DNA (750bp) protein (250aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K03767 peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
Uncharacterized protein {ECO:0000313|EMBL:KFN48448.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Peptidyl-prolyl cis-trans isomerase id=2840305 bin=GWF1_Xanthomonadales_69_6 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_cont_1000_p_scaffold_4588_curated_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10635..11111)
DNA (477bp) protein (159aa)
Phosphotransferase system mannitol/fructose-specific IIA domain-containing protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JNL5_9PROT
Phosphotransferase system mannitol/fructose-specific IIA domain-containing protein {ECO:0000313|EMBL:EKE76873.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ptsN; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
SCNpilot_cont_1000_p_scaffold_4588_curated_16
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11306..12829)
DNA (1524bp) protein (508aa)
RNA polymerase sigma-54 factor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ3_PHEZH
rpoN; RNA polymerase factor sigma-54; K03092 RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_1000_p_scaffold_4588_curated_17
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12839..13669)
DNA (831bp) protein (277aa)
ABC transporter-like protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter ATP-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J1L1_9PROT
Lipopolysaccharide export system ATP-binding protein lptB {ECO:0000313|EMBL:CCQ75135.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
Displaying 17 items

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