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SCNpilot_cont_300_bf_scaffold_1986_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1986_curated_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..819)
DNA (819bp) protein (273aa)
topB; type IB DNA topoisomerase; K03168 DNA topoisomerase I [EC:5.99.1.2]
Topoisomerase IB n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM48_9RHIZ
Topoisomerase IB {ECO:0000313|EMBL:EIM25040.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_300_bf_scaffold_1986_curated_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(870..1187)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2SKF2_9RHIZ
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1986_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1268..2203)
DNA (936bp) protein (312aa)
Putative adenylate/guanylate cyclase n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M631_RHIL3
putative adenylate/guanylate cyclase
Putative adenylate/guanylate cyclase {ECO:0000313|EMBL:CAK03308.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_300_bf_scaffold_1986_curated_4
unknown

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2358..2537
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1986_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3697..4077)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL22 RepID=U9GY96_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE40369.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_300_bf_scaffold_1986_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4153..4524
DNA (372bp) protein (124aa)
Transcriptional regulator, HxlR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XBK8_VARPD
transcriptional regulator, HxlR family
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:AGU49871.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_1986_curated_7
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4512..5561)
DNA (1050bp) protein (350aa)
Putative Allophanate hydrolase, subunit 2 n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZCK4_AZOL4
Allophanate hydrolase {ECO:0000313|EMBL:AIB13677.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative Allophanate hydrolase, subunit 2
SCNpilot_cont_300_bf_scaffold_1986_curated_8
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5558..6295)
DNA (738bp) protein (246aa)
Putative Allophanate hydrolase, subunit 1 n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDC3_AZOL4
putative Allophanate hydrolase, subunit 1
Putative Allophanate hydrolase, subunit 1 {ECO:0000313|EMBL:CBS89438.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_cont_300_bf_scaffold_1986_curated_9
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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6334..7128
DNA (795bp) protein (265aa)
UPF0271 protein BAL199_26332 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TV25_9PROT
UPF0271 protein BAL199_26332 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative Allophanate hydrolase, subunit 2 (modular protein)
SCNpilot_cont_300_bf_scaffold_1986_curated_10
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7204..9501
DNA (2298bp) protein (766aa)
carbon-monoxide dehydrogenase (EC:1.2.99.2); K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
Carbon-monoxide dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q132Q3_RHOPS
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:KGM34560.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_300_bf_scaffold_1986_curated_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9575..10819
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI000378914A
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1986_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11170..11763
DNA (594bp) protein (198aa)
molybdopterin oxidoreductase n=1 Tax=Dyella japonica RepID=UPI0002E65991
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1986_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11812..14262
DNA (2451bp) protein (817aa)
formate dehydrogenase n=1 Tax=Methyloferula stellata RepID=UPI000381B83E
formate dehydrogenase-O major subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1986_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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14280..15182
DNA (903bp) protein (301aa)
formate dehydrogenase-N subunit beta n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037975E9
formate dehydrogenase-O iron-sulfur subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1986_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15179..15808
DNA (630bp) protein (210aa)
Formate dehydrogenase, gamma subunit n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ID19_XANP2
formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1986_curated_16
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15778..16773
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000308FB61
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
formate dehydrogenase accessory protein FdhE; K02380 FdhE protein
SCNpilot_cont_300_bf_scaffold_1986_curated_17
Paracoccus sp. 5503, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17051..18436
DNA (1386bp) protein (462aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=1525717 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 5503.;"
selenocysteine synthase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037FC1F8
SCNpilot_cont_300_bf_scaffold_1986_curated_18
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18516..19247
DNA (732bp) protein (244aa)
UPI0003CDD22B related cluster n=1 Tax=unknown RepID=UPI0003CDD22B
Uncharacterized protein {ECO:0000313|EMBL:ESW80446.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
Sel1 repeat-containing protein; K07126
SCNpilot_cont_300_bf_scaffold_1986_curated_19
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19244..19645
DNA (402bp) protein (134aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IBV8_9RHIZ
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EPE96693.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
selB_[H]; Selenocysteine-specific translation elongation factor
Displaying 19 items

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