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SCNpilot_expt_1000_bf_scaffold_1173_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1173_curated_1
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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618..1112
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5M9_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC65012.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_1000_bf_scaffold_1173_curated_2
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1550..2530
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Ponticaulis koreensis RepID=UPI0003B6F689
Scaffold7, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31889.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1173_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2943..3821
DNA (879bp) protein (293aa)
D-tagatose-1,6-bisphosphate aldolase subunit GatY {ECO:0000313|EMBL:AKH44018.1}; EC=4.1.2.40 {ECO:0000313|EMBL:AKH44018.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative Fructose-bisphosphate aldolase class 2 (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EMB4_9RHOB
SCNpilot_expt_1000_bf_scaffold_1173_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3837..4568
DNA (732bp) protein (244aa)
Phosphorylated carbohydrates phosphatase {ECO:0000313|EMBL:AKH44017.1}; EC=3.1.3.- {ECO:0000313|EMBL:AKH44017.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Uncharacterized protein id=3667437 bin=GWC2_Bacteroidetes_40_22 species=unknown genus=unknown taxon_order=Brassicales taxon_class=unknown phylum=Streptophyta tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1173_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4582..5259
DNA (678bp) protein (226aa)
PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL {ECO:0000313|EMBL:AKH44016.1}; EC=2.7.-.- {ECO:0000313|EMBL:AKH44016.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydroxyacetone kinase, L subunit; K05879 dihydroxyacetone kinase, C-terminal domain [EC:2.7.1.-]
dihydroxyacetone kinase n=1 Tax=Glaciibacter superstes RepID=UPI0003B64C56
SCNpilot_expt_1000_bf_scaffold_1173_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5585..6283
DNA (699bp) protein (233aa)
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK {ECO:0000313|EMBL:AKH44015.1}; EC=2.7.-.- {ECO:0000313|EMBL:AKH44015.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydroxyacetone kinase n=1 Tax=Arthrobacter sp. TB 23 RepID=UPI0003648184
dihydroxyacetone kinase subunit DhaK
SCNpilot_expt_1000_bf_scaffold_1173_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6344..6784)
DNA (441bp) protein (147aa)
Putative membrane protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZE5_BREDI
Uncharacterized protein {ECO:0000313|EMBL:AKH42355.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1173_curated_8
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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comp(6813..7283)
DNA (471bp) protein (157aa)
Transcriptional regulator, MerR family id=3825187 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Salinispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
AraC family transcriptional regulator
Tax=GWC2_RIF_CHLX_73_18_curated
SCNpilot_expt_1000_bf_scaffold_1173_curated_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7847..8782
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YPW0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50707.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K09781 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1173_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9083..10033)
DNA (951bp) protein (317aa)
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase {ECO:0000313|EMBL:AKH44014.1}; EC=1.14.11.- {ECO:0000313|EMBL:AKH44014.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMS9_9SPHN
tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase
SCNpilot_expt_1000_bf_scaffold_1173_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10059..10520)
DNA (462bp) protein (154aa)
MaoC family dehydratase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002886186
Bifunctional protein PaaZ {ECO:0000313|EMBL:AKH44013.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dehydratase, MaoC family protein
SCNpilot_expt_1000_bf_scaffold_1173_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10644..11111
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y809_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44012.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1173_curated_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11125..11415
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL54_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49315.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1173_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11408..13021
DNA (1614bp) protein (538aa)
Acryloyl-CoA reductase (NADH) {ECO:0000313|EMBL:AKH44008.1}; EC=1.3.1.95 {ECO:0000313|EMBL:AKH44008.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
butyryl-CoA dehydrogenase (EC:1.3.8.1)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI000263169D
SCNpilot_expt_1000_bf_scaffold_1173_curated_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12981..13565)
DNA (585bp) protein (195aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO40489.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_1000_bf_scaffold_1173_curated_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13811..14380
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S4H2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO40488.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1173_curated_17
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14384..15457
DNA (1074bp) protein (358aa)
Carnitinyl-CoA dehydratase {ECO:0000313|EMBL:AKH44007.1}; EC=4.2.1.- {ECO:0000313|EMBL:AKH44007.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAX3_9SPHN
enoyl-CoA hydratase/isomeras
SCNpilot_expt_1000_bf_scaffold_1173_curated_18
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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15554..16567
DNA (1014bp) protein (338aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
cysD; sulfate adenylyltransferase subunit 2; K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
Sulfate adenylyltransferase subunit 2 n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z896_9SPHN
SCNpilot_expt_1000_bf_scaffold_1173_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16665..18713
DNA (2049bp) protein (683aa)
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (EC:2.7.1.25 2.7.7.4); K00955 bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
adenylylsulfate kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B8B7
Bifunctional enzyme CysN/CysC {ECO:0000313|EMBL:AKH44005.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_1173_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18710..19453
DNA (744bp) protein (248aa)
3'-phosphoadenosine 5'-phosphate phosphatase {ECO:0000313|EMBL:AKH44004.1}; EC=3.1.3.7 {ECO:0000313|EMBL:AKH44004.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
MFS transporter n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039B0156
SCNpilot_expt_1000_bf_scaffold_1173_curated_21
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19511..19936
DNA (426bp) protein (142aa)
Peroxiredoxin n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HNT1_9SPHN
Peroxiredoxin {ECO:0000313|EMBL:EQB18036.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
OsmC-like protein; K04063 osmotically inducible protein OsmC
SCNpilot_expt_1000_bf_scaffold_1173_curated_22
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19974..20219)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAG9_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_expt_1000_bf_scaffold_1173_curated_23
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20285..20491)
DNA (207bp) protein (69aa)
cold-shock protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B4AAD6
Cold-shock protein {ECO:0000313|EMBL:KHK93211.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_1000_bf_scaffold_1173_curated_24
unknown

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20747..20986
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1173_curated_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21020..21499
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B5707D
hypothetical protein; K09768 hypothetical protein
UPF0178 protein SLG_30000 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1173_curated_26
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21599..22471
DNA (873bp) protein (291aa)
UPI0003D67635 related cluster n=1 Tax=unknown RepID=UPI0003D67635
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
Ku family containing protein; K10979 DNA end-binding protein Ku
SCNpilot_expt_1000_bf_scaffold_1173_curated_27
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22519..25104
DNA (2586bp) protein (862aa)
hypothetical protein; K01971 DNA ligase (ATP) [EC:6.5.1.1]
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBM4_ERYLH
ATP-dependent DNA ligase {ECO:0000313|EMBL:KHL25054.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_1000_bf_scaffold_1173_curated_28
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25354..26019
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3ED4E
Uncharacterized protein {ECO:0000313|EMBL:AJA09231.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_expt_1000_bf_scaffold_1173_curated_29
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26098..28314)
DNA (2217bp) protein (739aa)
beta-glucosidase (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21]
beta-glucosidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030DA2C4
Beta-glucosidase {ECO:0000313|EMBL:EZP53205.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_1000_bf_scaffold_1173_curated_30
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28355..29746)
DNA (1392bp) protein (464aa)
Fumarate hydratase class II {ECO:0000313|EMBL:AKH43994.1}; EC=4.2.1.2 {ECO:0000313|EMBL:AKH43994.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
class II fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IHE7_9SPHN
Displaying items 1-30 of 31 in total

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