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scnpilot_expt_750_p_scaffold_1370_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1370_curated_1
Bacteroides sp. 1_1_6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2..715
DNA (714bp) protein (238aa)
Hydrolase of the alpha/beta superfamily n=2 Tax=Bacteroides RepID=Q8A007_BACTN
hypothetical protein; K06889 rbh
Uncharacterized protein {ECO:0000313|EMBL:EES68472.2}; TaxID=469586 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_6.;"
scnpilot_expt_750_p_scaffold_1370_curated_2
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1102..1596)
DNA (495bp) protein (165aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X2X7_9PORP
scnpilot_expt_750_p_scaffold_1370_curated_3
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1698..2450)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J2U7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGJ99970.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1370_curated_4
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2691..3824
DNA (1134bp) protein (378aa)
DNA replication and repair protein RecF n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXQ6_9PORP
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
DNA repair protein RecF; K03629 DNA replication and repair protein RecF rbh
scnpilot_expt_750_p_scaffold_1370_curated_5
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3836..4129
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXQ5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04508.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1370_curated_6
Bacteroides fragilis CAG:558, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4122..4589)
DNA (468bp) protein (156aa)
putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (HPPK); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Bacteroides fragilis CAG:558 RepID=R5RX23_9BACE
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:CCZ39321.1}; TaxID=1263047 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:558.;"
scnpilot_expt_750_p_scaffold_1370_curated_7
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4591..5640)
DNA (1050bp) protein (350aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J3I0_9PORP
scnpilot_expt_750_p_scaffold_1370_curated_8
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5718..6434)
DNA (717bp) protein (239aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CU97_BACPM
scnpilot_expt_750_p_scaffold_1370_curated_9
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6434..7252)
DNA (819bp) protein (273aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
undecaprenyL-diphosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
Undecaprenyl-diphosphatase n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WVZ6_9PORP
scnpilot_expt_750_p_scaffold_1370_curated_10
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7252..7503)
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J3I3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGJ99768.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1370_curated_11
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7527..8408)
DNA (882bp) protein (294aa)
Cell division protein FtsX n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J3I4_9PORP
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
cell division protein FtsX; K09811 cell division transport system permease protein
scnpilot_expt_750_p_scaffold_1370_curated_12
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8550..9494)
DNA (945bp) protein (315aa)
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
coaA; pantothenate kinase; K00867 type I pantothenate kinase [EC:2.7.1.33]
Pantothenate kinase n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J3H6_9PORP
scnpilot_expt_750_p_scaffold_1370_curated_13
unknown

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comp(9531..9761)
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1370_curated_14
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9785..11242
DNA (1458bp) protein (486aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J3F3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGJ99738.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
iroN-regulated ABC transporter membrane component sufb; K09014 Fe-S cluster assembly protein SufB
scnpilot_expt_750_p_scaffold_1370_curated_15
unknown

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comp(11212..11358)
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1370_curated_16
Bacteroides reticulotermitis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11666..14146
DNA (2481bp) protein (827aa)
alpha-L-fucosidase (EC:3.2.1.51); K15923 alpha-L-fucosidase 2 [EC:3.2.1.51]
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5ITM0_9PORP
Large secreted protein {ECO:0000313|EMBL:GAE83096.1}; TaxID=1445607 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides reticulotermitis JCM 10512.;"
scnpilot_expt_750_p_scaffold_1370_curated_17
Bacteroides salyersiae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14290..16368
DNA (2079bp) protein (693aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I8Z5J9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY70725.1}; TaxID=997887 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salyersiae CL02T12C01.;"
spore coat protein CotH
scnpilot_expt_750_p_scaffold_1370_curated_18
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16525..17862
DNA (1338bp) protein (446aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IWG8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK02478.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
DEAD/DEAH box helicase
scnpilot_expt_750_p_scaffold_1370_curated_19
Bacteroides eggerthii CAG:109, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18046..18267
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Bacteroides oleiciplenus YIT 12058 RepID=K9DYU1_9BACE
Hsp90-like protein {ECO:0000313|EMBL:CCY55243.1}; TaxID=1263043 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides eggerthii CAG:109.;"
scnpilot_expt_750_p_scaffold_1370_curated_20
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18482..21025
DNA (2544bp) protein (848aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J3R7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGJ99615.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
hypothetical protein rbh
scnpilot_expt_750_p_scaffold_1370_curated_21
unknown

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21251..21457
DNA (207bp) protein (69aa)

This feature has no annotations

Displaying 21 items

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