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SCNpilot_expt_1000_bf_scaffold_49_curated

Search features with annotation key words

Displaying items 1-30 of 536 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_49_curated_1
RLO_RIF_OD1_13_41_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(75..377)
DNA (303bp) protein (101aa)
excinuclease ABC subunit C n=1 Tax=Cytophagales str. B6 RepID=UPI0003B7BA98
Excinuclease ABC C subunit domain protein; K07461 putative endonuclease
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_13_41_11_curated
SCNpilot_expt_1000_bf_scaffold_49_curated_2
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(601..1731)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IB17_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA42100.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_3
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1734..2075)
DNA (342bp) protein (114aa)
Transcriptional regulator, PadR family n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IB18_FLUTR
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:AEA42101.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2326..3654
DNA (1329bp) protein (443aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPH2_NIAKG
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:AEV97793.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3681..4901
DNA (1221bp) protein (407aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCT4_CHIPD
DEAD/DEAH box helicase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_49_curated_6
unknown

Not on your lists

comp(4917..5990)
DNA (1074bp) protein (358aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_49_curated_7
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6147..7406
DNA (1260bp) protein (420aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XSV6_PEDHD
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ACU05669.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_8
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7400..8755
DNA (1356bp) protein (452aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI00036B5573
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAU91820.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_9
Bizionia argentinensis, Bizionia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8755..9198
DNA (444bp) protein (148aa)
Rieske [2Fe-2S] domain protein n=1 Tax=Bizionia argentinensis JUB59 RepID=G2EAP4_9FLAO
Rieske [2Fe-2S] domain protein {ECO:0000313|EMBL:EGV44495.1}; TaxID=1046627 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Bizionia.;" source="Bizionia argentinensis JUB59.;"
Rieske (2Fe-2S) iron-sulfur domain-containing protein
SCNpilot_expt_1000_bf_scaffold_49_curated_10
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9205..10278
DNA (1074bp) protein (358aa)
Uncharacterized protein n=4 Tax=Myroides odoratimimus RepID=K1II30_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHO11821.1}; TaxID=883154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CIP 101113.;"
Imelysin
SCNpilot_expt_1000_bf_scaffold_49_curated_11
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

10302..11675
DNA (1374bp) protein (458aa)
thiol oxidoreductase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B75527
putative thiol oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
SCNpilot_expt_1000_bf_scaffold_49_curated_12
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11899..15033
DNA (3135bp) protein (1045aa)
cation transporter n=1 Tax=Segetibacter koreensis RepID=UPI00036CAC8F
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:EHQ29145.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
CzcA family heavy metal efflux pump; K07239 heavy-metal exporter, HME family
SCNpilot_expt_1000_bf_scaffold_49_curated_13
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15090..15623)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI000349D7B4
Uncharacterized protein {ECO:0000313|EMBL:KIC89916.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_49_curated_14
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(15797..16816)
DNA (1020bp) protein (340aa)
aromatic amino acid beta-eliminating lyase/threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5]
Aromatic amino acid beta-eliminating lyase/threonine aldolase n=1 Tax=Thermincola potens (strain JR) RepID=D5XAQ1_THEPJ
Threonine aldolase {ECO:0000313|EMBL:KIF31036.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
SCNpilot_expt_1000_bf_scaffold_49_curated_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16850..17362
DNA (513bp) protein (171aa)
DNA uptake protein and related DNA-binding protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP71_NIAKG
DNA uptake protein and related DNA-binding protein
DNA uptake protein and related DNA-binding protein {ECO:0000313|EMBL:AEW03189.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_16
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17433..18575
DNA (1143bp) protein (381aa)
Butyryl-CoA dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP72_NIAKG
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KIC92465.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
butyryl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_49_curated_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18911..20632)
DNA (1722bp) protein (574aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9E2_NIAKG
hypothetical protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:AEV99132.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_18
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20763..21605)
DNA (843bp) protein (281aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
transketolase n=1 Tax=Niabella aurantiaca RepID=UPI000365132C
Transketolase {ECO:0000313|EMBL:GAO41739.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_49_curated_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21700..22767
DNA (1068bp) protein (356aa)
A/G-specific adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-]
A/G-specific adenine glycosylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL91_CHIPD
A/G-specific adenine glycosylase {ECO:0000313|EMBL:ACU58435.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_20
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22815..23273
DNA (459bp) protein (153aa)
Single-stranded DNA-binding protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL90_CHIPD
single-strand binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

23354..24700
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000365DF92
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_49_curated_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24701..25588)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PC67_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59450.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_49_curated_23
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25626..27971)
DNA (2346bp) protein (782aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase 1 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PC68_CHIPD
SCNpilot_expt_1000_bf_scaffold_49_curated_24
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28114..29463)
DNA (1350bp) protein (450aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS04381.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
SCNpilot_expt_1000_bf_scaffold_49_curated_25
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29674..30852
DNA (1179bp) protein (393aa)
proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8]
Proline dehydrogenase {ECO:0000313|EMBL:ACU63859.1}; EC=1.5.99.8 {ECO:0000313|EMBL:ACU63859.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Proline dehydrogenase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKU9_CHIPD
SCNpilot_expt_1000_bf_scaffold_49_curated_26
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30897..31181)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002F504BC
Septum formation initiator {ECO:0000313|EMBL:KHJ36510.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
septum formation initiator
SCNpilot_expt_1000_bf_scaffold_49_curated_27
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31210..32499)
DNA (1290bp) protein (430aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
enolase; K01689 enolase [EC:4.2.1.11]
enolase n=1 Tax=Niabella aurantiaca RepID=UPI00035E227B
SCNpilot_expt_1000_bf_scaffold_49_curated_28
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32614..33714)
DNA (1101bp) protein (367aa)
mnmA; tRNA-specific 2-thiouridylase MnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPZ7_CHIPD
SCNpilot_expt_1000_bf_scaffold_49_curated_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33820..34860
DNA (1041bp) protein (347aa)
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
3-dehydroquinate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL6_NIAKG
SCNpilot_expt_1000_bf_scaffold_49_curated_30
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34844..36064
DNA (1221bp) protein (407aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PC55_CHIPD
Displaying items 1-30 of 536 in total

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