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SCNpilot_expt_1000_bf_scaffold_229_curated

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_229_curated_1
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70..1626)
DNA (1557bp) protein (519aa)
FAD linked oxidase-like protein; K00104 glycolate oxidase [EC:1.1.3.15]
FAD linked oxidase domain protein n=2 Tax=Burkholderia cenocepacia RepID=A0K4R0_BURCH
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:AJC23029.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
SCNpilot_expt_1000_bf_scaffold_229_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1731..4826
DNA (3096bp) protein (1032aa)
Transcriptional regulator, LuxR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XCT4_VARPD
transcriptional regulator, LuxR family
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AGU50742.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_229_curated_3
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4873..5130)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003746F7D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG20295.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCNpilot_expt_1000_bf_scaffold_229_curated_4
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

5312..6706
DNA (1395bp) protein (465aa)
(R)-6-hydroxynicotine oxidase (EC:1.5.3.6)
(R)-6-hydroxynicotine oxidase {ECO:0000313|EMBL:AEB12661.1}; EC=1.5.3.6 {ECO:0000313|EMBL:AEB12661.1};; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
(R)-6-hydroxynicotine oxidase n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NKK1_MARHT
SCNpilot_expt_1000_bf_scaffold_229_curated_5
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6711..8117)
DNA (1407bp) protein (469aa)
Sigma-54 dependent DNA-binding response regulator n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3C3_AROAE
Fis family transcriptional regulator
Sigma-54 dependent DNA-binding response regulator {ECO:0000313|EMBL:CAI08191.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_229_curated_6
unknown

Not on your lists

8286..8576
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_229_curated_7
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8573..9106
DNA (534bp) protein (178aa)
coxB2; cytochrome-c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Probable cytochrome-c oxidase subunit II {ECO:0000313|EMBL:CAI08192.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CAI08192.1};; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Probable cytochrome-c oxidase subunit II n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3C2_AROAE
SCNpilot_expt_1000_bf_scaffold_229_curated_8
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9116..10606
DNA (1491bp) protein (497aa)
coxA2; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase, subunit I (EC 1.9.3.1) n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3C1_AROAE
Cytochrome c oxidase, subunit I (EC 1.9.3.1) {ECO:0000313|EMBL:CAI08193.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_229_curated_9
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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10603..11208
DNA (606bp) protein (202aa)
Electron transport protein SCO1/SenC n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3C0_AROAE
electron transport protein SCO1/SenC; K07152
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:CAI08194.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_229_curated_10
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11205..11918
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3B9_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI08195.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_229_curated_11
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11815..12369)
DNA (555bp) protein (185aa)
Carboxylesterase id=3732186 bin=GWA2_Methylomirabilis_73_35 species=Alcaligenes faecalis genus=Alcaligenes taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative esterase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_229_curated_12
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12697..13704
DNA (1008bp) protein (336aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01738 cysteine synthase A [EC:2.5.1.47]
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IFH3_METNO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_1000_bf_scaffold_229_curated_13
Pseudomonas sp. 12M76_air, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14005..14391
DNA (387bp) protein (129aa)
Glycine cleavage system H protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GYJ4_9GAMM
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1461581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 12M76_air.;"
glycine cleavage system H protein
SCNpilot_expt_1000_bf_scaffold_229_curated_14
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14396..17359
DNA (2964bp) protein (988aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
gcvP1; glycine dehydrogenase (EC:1.4.4.2); K00281 glycine dehydrogenase [EC:1.4.4.2]
Glycine dehydrogenase (decarboxylating) n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RY79_9BURK
SCNpilot_expt_1000_bf_scaffold_229_curated_15
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17414..18553
DNA (1140bp) protein (380aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
glycine cleavage system T protein; K00605 aminomethyltransferase [EC:2.1.2.10]
Aminomethyltransferase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RY80_9BURK
SCNpilot_expt_1000_bf_scaffold_229_curated_16
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18568..19590
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00037DDFD1
aapJ; general L-amino acid transport system substrate-binding protein
General L-amino acid transport system substrate-binding protein {ECO:0000313|EMBL:AFK54352.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_229_curated_17
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19647..20789
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036C52BC
Putative glutamine ABC transporter permease protein GlnP {ECO:0000313|EMBL:EXI70718.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
aapQ; amino acid ABC transport, inner membrane component
SCNpilot_expt_1000_bf_scaffold_229_curated_18
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20794..21837
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003624E59
Inner membrane amino-acid ABC transporter permease protein YhdY {ECO:0000313|EMBL:EXI70719.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
aapM; general L-amino acid transport system permease
SCNpilot_expt_1000_bf_scaffold_229_curated_19
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21924..22715
DNA (792bp) protein (264aa)
ABC transporter-like protein; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=Caldimonas manganoxidans RepID=UPI000360FE18
GlnQ protein {ECO:0000313|EMBL:BAQ46654.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_expt_1000_bf_scaffold_229_curated_20
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22719..23291)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00035EF61B
hemerythrin HHE cation-binding domain-containing protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_1000_bf_scaffold_229_curated_21
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23293..24705)
DNA (1413bp) protein (471aa)
dld; d-lactate dehydrogenase (cytochrome) oxidoreductase (EC:1.1.2.4); K00102 D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]
D-lactate dehydrogenase n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI000376FFD6
2-hydroxy-acid oxidase {ECO:0000313|EMBL:EYS96439.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
SCNpilot_expt_1000_bf_scaffold_229_curated_22
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24720..25718)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XSQ7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO84791.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_229_curated_23
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25834..26400
DNA (567bp) protein (189aa)
Cob(I)yrinic acid a,c-diamide adenosyltransferase CobO {ECO:0000313|EMBL:EIZ03120.1}; EC=2.5.1.17 {ECO:0000313|EMBL:EIZ03120.1};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
Cobalamin adenosyltransferase family protein; K00798 cob(I)alamin adenosyltransferase [EC:2.5.1.17]
Cob(I)yrinic acid a,c-diamide adenosyltransferase CobO n=1 Tax=Ralstonia sp. PBA RepID=I9KSC7_9RALS
SCNpilot_expt_1000_bf_scaffold_229_curated_24
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26373..26966)
DNA (594bp) protein (198aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYA5_9BURK
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EFV94604.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Crp family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_229_curated_25
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27072..28145)
DNA (1074bp) protein (358aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=447217 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain K
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UKC5_ANASK
SCNpilot_expt_1000_bf_scaffold_229_curated_26
Arthrobacter sp. 11W110_air, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28333..29637)
DNA (1305bp) protein (435aa)
Major facilitator superfamily MFS_1 n=1 Tax=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) RepID=B8HDU6_ARTCA
Major Facilitator Superfamily protein {ECO:0000313|EMBL:CEA09003.1}; TaxID=1461584 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. 11W110_air.;"
napC; NapC protein
SCNpilot_expt_1000_bf_scaffold_229_curated_27
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29681..30385
DNA (705bp) protein (235aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VLA4_POLNA
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM36432.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_1000_bf_scaffold_229_curated_28
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30413..31207)
DNA (795bp) protein (265aa)
Probable ABC transporter, ATP-binding protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K434_AZOSB
ABC transporter ATP-binding protein; K05833 putative ABC transport system ATP-binding protein
Probable ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CAL93589.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_229_curated_29
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31204..32097)
DNA (894bp) protein (298aa)
Putative transmembrane component of ABC transporter n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IV13_BORPD
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:KCB37125.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
transmembrane component of ABC transporter; K05832 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_229_curated_30
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32141..33112)
DNA (972bp) protein (324aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K432_AZOSB
Oligopeptide ABC transporter, oligopeptide-binding protein {ECO:0000313|EMBL:KCB37382.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
hypothetical protein; K01989 putative ABC transport system substrate-binding protein
Displaying items 1-30 of 117 in total

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