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SCNpilot_expt_1000_bf_scaffold_579_curated

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Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_579_curated_1
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..683
DNA (681bp) protein (227aa)
nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:ACB33751.1}; EC=1.7.2.4 {ECO:0000313|EMBL:ACB33751.1};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Nitrous-oxide reductase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y809_LEPCP
split gene, connects with SCNpilot_expt_1000_bf_scaffold_357_curated_1 Rose Kantor (11/24/15)
SCNpilot_expt_1000_bf_scaffold_579_curated_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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737..3373
DNA (2637bp) protein (879aa)
FMN-binding domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y808_LEPCP
FMN-binding domain-containing protein
FMN-binding domain protein {ECO:0000313|EMBL:ACB33750.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_579_curated_3
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3430..4698
DNA (1269bp) protein (423aa)
Periplasmic copper-binding n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y807_LEPCP
periplasmic copper-binding protein; K07218 nitrous oxidase accessory protein
Periplasmic copper-binding {ECO:0000313|EMBL:ACB33749.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_579_curated_4
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4688..5719
DNA (1032bp) protein (344aa)
ABC transporter-related protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y806_LEPCP
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein
ABC transporter-related protein {ECO:0000313|EMBL:ACB33748.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_579_curated_5
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5716..6174
DNA (459bp) protein (153aa)
ABC-2 type transporter n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y805_LEPCP
ABC-2 type transporter; K01992 ABC-2 type transport system permease protein
ABC-2 type transporter {ECO:0000313|EMBL:ACB33747.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_579_curated_6
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6123..6506
DNA (384bp) protein (128aa)
ABC transporter n=1 Tax=Acidovorax sp. NO-1 RepID=H0C4S9_9BURK
ABC transporter {ECO:0000313|EMBL:EHL20413.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
ABC-2 type transporter; K01992 ABC-2 type transport system permease protein
SCNpilot_expt_1000_bf_scaffold_579_curated_7
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6503..7090
DNA (588bp) protein (196aa)
NosL family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T722_ACIDE
NosL family protein {ECO:0000313|EMBL:EER59735.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
NosL family protein
SCNpilot_expt_1000_bf_scaffold_579_curated_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7102..7770
DNA (669bp) protein (223aa)
hypothetical protein id=12550733 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_579_curated_9
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7787..10522)
DNA (2736bp) protein (912aa)
acyl-CoA synthetase (EC:6.2.1.3); K09181 hypothetical protein
GCN5 family acetyltransferase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036FAC2D
Tax=CG_Rhodof_02
SCNpilot_expt_1000_bf_scaffold_579_curated_10
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10581..11507)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y993_9BURK
histone deacetylase superfamily protein
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_expt_1000_bf_scaffold_579_curated_11
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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11671..13560
DNA (1890bp) protein (630aa)
Cl-channel voltage-gated family protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KAT4_NITWC
Cl-channel voltage-gated family protein
Cl-channel voltage-gated family protein {ECO:0000313|EMBL:ADJ29511.1}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
SCNpilot_expt_1000_bf_scaffold_579_curated_12
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13487..13957)
DNA (471bp) protein (157aa)
ExbD protein n=1 Tax=Thauera phenylacetica B4P RepID=N7A427_9RHOO
ExbD protein {ECO:0000313|EMBL:ENO99034.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
exbD; biopolymer transport protein; K03559 biopolymer transport protein ExbD
SCNpilot_expt_1000_bf_scaffold_579_curated_13
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13959..14726)
DNA (768bp) protein (256aa)
ExbB oriteub n=1 Tax=Thauera phenylacetica B4P RepID=N6Z583_9RHOO
ExbB oriteub {ECO:0000313|EMBL:ENO99035.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
exbB; ExbB oriteub; K03561 biopolymer transport protein ExbB
SCNpilot_expt_1000_bf_scaffold_579_curated_14
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14775..15608)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6YXN7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO99036.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_579_curated_15
Neisseria bacilliformis, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15612..17099)
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Neisseria bacilliformis ATCC BAA-1200 RepID=F2BFD7_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:EGF09009.1}; TaxID=888742 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria bacilliformis ATCC BAA-1200.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_579_curated_16
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17192..18085)
DNA (894bp) protein (298aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U6AIE7_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EXF45985.1}; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_579_curated_17
Neisseria bacilliformis, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18155..21778)
DNA (3624bp) protein (1208aa)
Putative Ton-B dependent hemine receptor n=2 Tax=Pseudomonas aeruginosa RepID=U6AKL9_PSEAI
TonB-dependent receptor {ECO:0000313|EMBL:EGF09005.1}; TaxID=888742 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria bacilliformis ATCC BAA-1200.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_579_curated_18
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21995..23023)
DNA (1029bp) protein (343aa)
Putative FecR protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82V81_NITEU
fecR; FecR protein rbh
Putative FecR protein {ECO:0000313|EMBL:CAD85129.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_579_curated_19
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23029..23616)
DNA (588bp) protein (196aa)
RNA polymerase sigma factor n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IDD4_BORPD
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000313|EMBL:CAP44806.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_579_curated_20
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23738..24325)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9ISA9_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP43278.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_579_curated_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(24443..24952)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030EE687
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_579_curated_22
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25091..25951
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQH3_AGRRK
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_579_curated_23

Not on your lists

26101..26391
DNA (291bp) protein (97aa)
Putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E231_THIND
Marine sediment metagenome DNA, contig: S03H2_S04021 {ECO:0000313|EMBL:GAH49304.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
SCNpilot_expt_1000_bf_scaffold_579_curated_24
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26391..26756
DNA (366bp) protein (122aa)
Plasmid stabilization system protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E1Y9_THIND
plasmid stabilization system protein
Plasmid stabilization system protein {ECO:0000313|EMBL:AGA35308.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
SCNpilot_expt_1000_bf_scaffold_579_curated_25
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(27056..27859)
DNA (804bp) protein (268aa)
LysR family transcriptional regulator n=1 Tax=Thauera sp. 63 RepID=N6YAX6_9RHOO
LysR family transcriptional regulator {ECO:0000313|EMBL:ENO79278.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_579_curated_26
unknown

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28034..28969
DNA (936bp) protein (312aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_579_curated_27
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28978..29661
DNA (684bp) protein (228aa)
transcriptional regulator n=1 Tax=Azoarcus toluclasticus RepID=UPI00035E53EA
copR; two component response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_579_curated_28
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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29661..31058
DNA (1398bp) protein (466aa)
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI0003821D84
copS_cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
SCNpilot_expt_1000_bf_scaffold_579_curated_29
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31272..31910
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000368E054
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL22802.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_579_curated_30
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(31914..32384)
DNA (471bp) protein (157aa)
Cytochrome n=1 Tax=Oceanibaculum indicum P24 RepID=K2J5E8_9PROT
Cytochrome C {ECO:0000313|EMBL:EWY42501.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
putative cytochrome c
Displaying items 1-30 of 130 in total

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