name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_357_curated_1
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..1092)
|
Nitrous-oxide reductase {ECO:0000313|EMBL:ACB33751.1}; EC=1.7.2.4 {ECO:0000313|EMBL:ACB33751.1};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Nitrous-oxide reductase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y809_LEPCP
|
split gene, connects with SCNpilot_expt_1000_bf_scaffold_579_curated_1
Rose Kantor
(11/24/15)
|
SCNpilot_expt_1000_bf_scaffold_357_curated_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1355..2380
|
ApbE family lipoprotein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y810_LEPCP
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein
ApbE family lipoprotein {ECO:0000313|EMBL:ACB33752.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_3
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2358..3362)
|
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
D-fructose-1,6-bisphosphate 1-phosphohydrolase; K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11]
fructose-1 6-bisphosphatase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00031EB6A9
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_4
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3394..6156)
|
Aminopeptidase N (Alpha-aminoacyl peptide hydrolase) metalloprotease pepN {ECO:0000313|EMBL:EAP71627.1}; EC=3.4.11.2 {ECO:0000313|EMBL:EAP71627.1};; TaxID=342110 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum UW551.;"
Aminopeptidase n (Alpha-aminoacylpeptide hydrolase) metalloprotease protein n=2 Tax=Ralstonia solanacearum RepID=B5SF57_RALSL
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_5
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6174..6881
|
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWH3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95077.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_6
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6921..7514)
|
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXP1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV94715.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_7
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7511..9178)
|
Convertase P-domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXP0_9BURK
Convertase P-domain protein {ECO:0000313|EMBL:EFV94714.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Furin
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_8
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9313..12876
|
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
Pyruvate carboxylase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXN9_9BURK
pyruvate carboxylase
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_9
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12873..13760
|
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z2C4_9RHOO
Membrane protein {ECO:0000313|EMBL:KHK57420.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13812..14867)
|
Putative sugar uptake ABC transporter ATP-binding protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XJ76_SINMM
ABC transporter related protein {ECO:0000313|EMBL:KFC63664.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative sugar uptake ABC transporter ATP-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_11
unknown
|
Not on your lists |
15021..15491
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_357_curated_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15488..15778
|
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003696D6E
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_13
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15853..16233
|
Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIX5_THIDA
30S ribosomal protein S30P / sigma 54 modulation protein
Tax=RBG_16_Gallionellales_56_9_curated
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_14
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16293..17504)
|
Esterase of the alpha-beta hydrolase superfamily protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CY45_9BURK
Esterase of the alpha-beta hydrolase superfamily protein {ECO:0000313|EMBL:EIJ48538.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
alpha/beta hydrolase superfamily esterase; K07001 NTE family protein
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17613..18398
|
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB45_9GAMM
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_16
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18409..20157
|
Sodium/hydrogen exchanger n=1 Tax=Thauera phenylacetica B4P RepID=N6YTY3_9RHOO
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ENO87698.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_17
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20154..21038
|
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0B268_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ16898.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
uspA; UspA
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_18
unknown
|
Not on your lists |
comp(21084..21284)
|
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00031558C4
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21265..23061)
|
FAD-dependent oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00035D07B5
putative 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
Putative 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase {ECO:0000313|EMBL:AGU52002.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23106..24254)
|
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] id=5081807 bin=GWF1_Burkholderiales_GWF1_66_17 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Tax=GWE1_Burkholderiales_65_30_curated
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_21
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24403..25863
|
ald; benzaldehyde dehydrogenase (EC:1.2.1.28); K00141 benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
Putative benzaldehyde dehydrogenase {ECO:0000313|EMBL:CAI09334.1}; EC=1.2.1.28 {ECO:0000313|EMBL:CAI09334.1};; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Putative benzaldehyde dehydrogenase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P030_AROAE
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25943..27022
|
hypothetical protein id=5081809 bin=GWF1_Burkholderiales_GWF1_66_17 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_23
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27055..28227
|
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase id=1269049 bin=GWE1_Burkholderiales_65_30 species=Saccharomonospora cyanea genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
mandelate racemase
Tax=BJP_08E140C01_Burkholderiales_65_30
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_24
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28257..29456
|
putative fatty acid-CoA racemase; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4]
carnitine dehydratase n=1 Tax=Cupriavidus sp. WS RepID=UPI00036BD9EA
Carnitine dehydratase {ECO:0000313|EMBL:KJK22760.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_25
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29519..30160)
|
TetR family transcriptional regulator id=5081806 bin=GWF1_Burkholderiales_GWF1_66_17 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
transcriptional regulator, TetR family
Tax=GWE1_Burkholderiales_65_30_curated
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_26
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30255..31505)
|
acyl-CoA transferase id=1269044 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
acyl-CoA transferase
Tax=BJP_08E140C01_Burkholderiales_65_30
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_27
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(31595..32773)
|
pobA; 4-hydroxybenzoate 3-monooxygenase (EC:1.14.13.2); K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:EAU64077.1}; EC=1.14.13.2 {ECO:0000313|EMBL:EAU64077.1};; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Caldimonas manganoxidans RepID=UPI00036F24DB
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_28
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
33003..33683
|
fructose-2,6-bisphosphatase n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00031B19E8
Phosphoglycerate / bisphosphoglycerate mutase {ECO:0000313|EMBL:EKZ98199.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
phosphoglycerate / bisphosphoglycerate mutase
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_29
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(33705..33947)
|
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1V7_AZOSB
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CAL92812.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
|
|
SCNpilot_expt_1000_bf_scaffold_357_curated_30
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
34195..36231
|
Putative diheme cytochrome c-553 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ6_9PROT
class I cytochrome c
Tax=CG_Rhodof_02
|