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SCNpilot_expt_1000_bf_scaffold_357_curated

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_357_curated_1
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1092)
DNA (1092bp) protein (364aa)
nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:ACB33751.1}; EC=1.7.2.4 {ECO:0000313|EMBL:ACB33751.1};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Nitrous-oxide reductase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y809_LEPCP
split gene, connects with SCNpilot_expt_1000_bf_scaffold_579_curated_1 Rose Kantor (11/24/15)
SCNpilot_expt_1000_bf_scaffold_357_curated_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1355..2380
DNA (1026bp) protein (342aa)
ApbE family lipoprotein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y810_LEPCP
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein
ApbE family lipoprotein {ECO:0000313|EMBL:ACB33752.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_357_curated_3
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2358..3362)
DNA (1005bp) protein (335aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
D-fructose-1,6-bisphosphate 1-phosphohydrolase; K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11]
fructose-1 6-bisphosphatase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00031EB6A9
SCNpilot_expt_1000_bf_scaffold_357_curated_4
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3394..6156)
DNA (2763bp) protein (921aa)
Aminopeptidase N (Alpha-aminoacyl peptide hydrolase) metalloprotease pepN {ECO:0000313|EMBL:EAP71627.1}; EC=3.4.11.2 {ECO:0000313|EMBL:EAP71627.1};; TaxID=342110 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum UW551.;"
pepN; aminopeptidase n (EC:3.4.11.2); K01256 aminopeptidase N [EC:3.4.11.2]
Aminopeptidase n (Alpha-aminoacylpeptide hydrolase) metalloprotease protein n=2 Tax=Ralstonia solanacearum RepID=B5SF57_RALSL
SCNpilot_expt_1000_bf_scaffold_357_curated_5
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6174..6881
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWH3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95077.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_expt_1000_bf_scaffold_357_curated_6
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6921..7514)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXP1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV94715.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_expt_1000_bf_scaffold_357_curated_7
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7511..9178)
DNA (1668bp) protein (556aa)
Convertase P-domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXP0_9BURK
Convertase P-domain protein {ECO:0000313|EMBL:EFV94714.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Furin
SCNpilot_expt_1000_bf_scaffold_357_curated_8
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9313..12876
DNA (3564bp) protein (1188aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
Pyruvate carboxylase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXN9_9BURK
pyruvate carboxylase
SCNpilot_expt_1000_bf_scaffold_357_curated_9
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12873..13760
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z2C4_9RHOO
Membrane protein {ECO:0000313|EMBL:KHK57420.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_357_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13812..14867)
DNA (1056bp) protein (352aa)
Putative sugar uptake ABC transporter ATP-binding protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XJ76_SINMM
ABC transporter related protein {ECO:0000313|EMBL:KFC63664.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative sugar uptake ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_357_curated_11
unknown

Not on your lists

15021..15491
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_357_curated_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15488..15778
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003696D6E
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_357_curated_13
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15853..16233
DNA (381bp) protein (127aa)
Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIX5_THIDA
30S ribosomal protein S30P / sigma 54 modulation protein
Tax=RBG_16_Gallionellales_56_9_curated
SCNpilot_expt_1000_bf_scaffold_357_curated_14
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16293..17504)
DNA (1212bp) protein (404aa)
Esterase of the alpha-beta hydrolase superfamily protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CY45_9BURK
Esterase of the alpha-beta hydrolase superfamily protein {ECO:0000313|EMBL:EIJ48538.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
alpha/beta hydrolase superfamily esterase; K07001 NTE family protein
SCNpilot_expt_1000_bf_scaffold_357_curated_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17613..18398
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB45_9GAMM
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_357_curated_16
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18409..20157
DNA (1749bp) protein (583aa)
Sodium/hydrogen exchanger n=1 Tax=Thauera phenylacetica B4P RepID=N6YTY3_9RHOO
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ENO87698.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family
SCNpilot_expt_1000_bf_scaffold_357_curated_17
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20154..21038
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0B268_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ16898.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
uspA; UspA
SCNpilot_expt_1000_bf_scaffold_357_curated_18
unknown

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comp(21084..21284)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00031558C4
SCNpilot_expt_1000_bf_scaffold_357_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21265..23061)
DNA (1797bp) protein (599aa)
FAD-dependent oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00035D07B5
putative 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
Putative 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase {ECO:0000313|EMBL:AGU52002.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_357_curated_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23106..24254)
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] id=5081807 bin=GWF1_Burkholderiales_GWF1_66_17 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_357_curated_21
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24403..25863
DNA (1461bp) protein (487aa)
ald; benzaldehyde dehydrogenase (EC:1.2.1.28); K00141 benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
Putative benzaldehyde dehydrogenase {ECO:0000313|EMBL:CAI09334.1}; EC=1.2.1.28 {ECO:0000313|EMBL:CAI09334.1};; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Putative benzaldehyde dehydrogenase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P030_AROAE
SCNpilot_expt_1000_bf_scaffold_357_curated_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25943..27022
DNA (1080bp) protein (360aa)
hypothetical protein id=5081809 bin=GWF1_Burkholderiales_GWF1_66_17 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_357_curated_23
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27055..28227
DNA (1173bp) protein (391aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase id=1269049 bin=GWE1_Burkholderiales_65_30 species=Saccharomonospora cyanea genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
mandelate racemase
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_357_curated_24
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28257..29456
DNA (1200bp) protein (400aa)
putative fatty acid-CoA racemase; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4]
carnitine dehydratase n=1 Tax=Cupriavidus sp. WS RepID=UPI00036BD9EA
Carnitine dehydratase {ECO:0000313|EMBL:KJK22760.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_expt_1000_bf_scaffold_357_curated_25
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29519..30160)
DNA (642bp) protein (214aa)
TetR family transcriptional regulator id=5081806 bin=GWF1_Burkholderiales_GWF1_66_17 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
transcriptional regulator, TetR family
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_357_curated_26
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30255..31505)
DNA (1251bp) protein (417aa)
acyl-CoA transferase id=1269044 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
acyl-CoA transferase
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_357_curated_27
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31595..32773)
DNA (1179bp) protein (393aa)
pobA; 4-hydroxybenzoate 3-monooxygenase (EC:1.14.13.2); K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:EAU64077.1}; EC=1.14.13.2 {ECO:0000313|EMBL:EAU64077.1};; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Caldimonas manganoxidans RepID=UPI00036F24DB
SCNpilot_expt_1000_bf_scaffold_357_curated_28
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33003..33683
DNA (681bp) protein (227aa)
fructose-2,6-bisphosphatase n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00031B19E8
Phosphoglycerate / bisphosphoglycerate mutase {ECO:0000313|EMBL:EKZ98199.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
phosphoglycerate / bisphosphoglycerate mutase
SCNpilot_expt_1000_bf_scaffold_357_curated_29
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33705..33947)
DNA (243bp) protein (81aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1V7_AZOSB
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CAL92812.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_357_curated_30
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34195..36231
DNA (2037bp) protein (679aa)
Putative diheme cytochrome c-553 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ6_9PROT
class I cytochrome c
Tax=CG_Rhodof_02
Displaying items 1-30 of 75 in total

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