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SCNpilot_expt_1000_bf_scaffold_374_curated

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_374_curated_1
unknown

Not on your lists

1..135
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_374_curated_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

161..985
DNA (825bp) protein (275aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase sdr n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Y895_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_374_curated_3
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1052..2056
DNA (1005bp) protein (335aa)
extracytoplasmic binding receptor n=1 Tax=Acidovorax avenae RepID=UPI0002D46A01
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX45622.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_4
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2083..3090
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036AC771
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGY25372.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_374_curated_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3103..4179
DNA (1077bp) protein (359aa)
NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DCE34C
opine dehydrogenase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_374_curated_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4199..5260
DNA (1062bp) protein (354aa)
Putative 3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZCQ0_9BRAD
putative 3-hydroxyacyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_374_curated_7
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5257..6228
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Pseudomonas thermotolerans RepID=UPI00037FB717
secreted protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
SCNpilot_expt_1000_bf_scaffold_374_curated_8
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6347..7819
DNA (1473bp) protein (491aa)
amino acid permease n=1 Tax=Acidovorax avenae RepID=UPI00036897E6
amino acid permease-associated protein
Amino acid permease-associated region {ECO:0000313|EMBL:ADX45641.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_9
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7887..8852)
DNA (966bp) protein (322aa)
Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q5L2_ACIAP
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADX45640.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_10
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9091..10434
DNA (1344bp) protein (448aa)
bioA; hypothetical protein (EC:2.6.1.62)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI0003482BC3
Uncharacterized protein {ECO:0000313|EMBL:AKE06182.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_11
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10475..11929
DNA (1455bp) protein (485aa)
betaine-aldehyde dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003787918
aldehyde dehydrogenase
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ADX45639.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_12
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12088..13491
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000365D00A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX45637.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_13
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13543..15198
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI000377BC6E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX45636.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_14
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15251..17638
DNA (2388bp) protein (796aa)
RND transporter n=1 Tax=Burkholderia kururiensis RepID=UPI0003495C6B
RND efflux transporter; K07003
RND efflux transporter {ECO:0000313|EMBL:ADX45635.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_15
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17649..18656
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI00034BE029
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX45634.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_16
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18687..19631
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI000349D28F
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADX45640.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_17
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19628..21271)
DNA (1644bp) protein (548aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q5K8_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX45636.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_18
Streptomyces aureofaciens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21417..22934)
DNA (1518bp) protein (506aa)
hypothetical protein n=1 Tax=Longispora albida RepID=UPI00036F00DA
Amino acid permease {ECO:0000313|EMBL:AIE41947.1}; TaxID=1894 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aureofaciens.;"
amino acid permease
SCNpilot_expt_1000_bf_scaffold_374_curated_19
unknown

Not on your lists

comp(22931..24229)
DNA (1299bp) protein (433aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_374_curated_20
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24246..25301)
DNA (1056bp) protein (352aa)
dapB-1; DapB (EC:1.3.1.26)
DapB {ECO:0000313|EMBL:ACO75663.1}; EC=1.17.1.8 {ECO:0000313|EMBL:ACO75663.1};; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
DapB n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1DCP4_LARHH
SCNpilot_expt_1000_bf_scaffold_374_curated_21
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(25301..26554)
DNA (1254bp) protein (418aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
SCNpilot_expt_1000_bf_scaffold_374_curated_22
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26581..27951)
DNA (1371bp) protein (457aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q5K9_ACIAP
Uncharacterized protein {ECO:0000313|EMBL:KGF80255.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_374_curated_23
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28183..30186
DNA (2004bp) protein (668aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000363D8D9
FAD dependent oxidoreductase {ECO:0000313|EMBL:KFG90694.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_374_curated_24
unknown

Not on your lists

30266..30793
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037E5E2E
SCNpilot_expt_1000_bf_scaffold_374_curated_25
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30804..31643)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003756D37
Uncharacterized protein {ECO:0000313|EMBL:KJC48770.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
AraC family transcriptional regulator; K04033 AraC family transcriptional regulator, ethanolamine operon transcriptional activator
SCNpilot_expt_1000_bf_scaffold_374_curated_26
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31940..33403
DNA (1464bp) protein (488aa)
NADH:flavin oxidoreductase, old yellow enzyme family n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KT97_9GAMM
NADH oxidase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_374_curated_27
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33442..33765
DNA (324bp) protein (108aa)
Ferredoxin n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2G9Z4_9BURK
Ferredoxin {ECO:0000313|EMBL:ESH87682.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
fdxA; ferredoxin protein; K05524 ferredoxin
SCNpilot_expt_1000_bf_scaffold_374_curated_28
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33767..37381
DNA (3615bp) protein (1205aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GCV4_NITSI
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_374_curated_29
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37474..38775
DNA (1302bp) protein (434aa)
polyhydroxyalkanoate depolymerase, intracellular; K05973 poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
Polyhydroxyalkanoate depolymerase, intracellular n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JE64_BURP8
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:ACC71272.1}; Flags: Precursor;; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
SCNpilot_expt_1000_bf_scaffold_374_curated_30
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38772..39278
DNA (507bp) protein (169aa)
rnfB; ferredoxin (EC:1.6.5.-); K03616 electron transport complex protein RnfB
Predicted NADH:ubiquinone oxidoreductase,subunit RnfB {ECO:0000313|EMBL:CAJ92289.1}; EC=1.6.5.- {ECO:0000313|EMBL:CAJ92289.1};; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
Predicted NADH:ubiquinone oxidoreductase,subunit RnfB n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0KCI2_CUPNH
Displaying items 1-30 of 105 in total

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