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SCNpilot_expt_1000_bf_scaffold_156_curated

Search features with annotation key words

Displaying items 1-30 of 205 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_156_curated_1
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

249..1925
DNA (1677bp) protein (559aa)
cytidine deaminase (EC:3.5.4.5); K01489 cytidine deaminase [EC:3.5.4.5]
Probable Cytidine deaminase n=1 Tax=Idiomarina baltica OS145 RepID=A3WNN0_9GAMM
Cytidine/deoxycytidylate deaminase family protein {ECO:0000313|EMBL:KIH80782.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
SCNpilot_expt_1000_bf_scaffold_156_curated_2
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2279..2707)
DNA (429bp) protein (143aa)
Biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD id=12495230 bin=THIO_HI species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_156_curated_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2707..3456)
DNA (750bp) protein (250aa)
MotA/TolQ/ExbB proton channel family protein; K03561 biopolymer transport protein ExbB id=12495231 bin=THIO_HI species=Nevskia ramosa genus=Nevskia taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
MotA/TolQ/ExbB proton channel family protein; K03561 biopolymer transport protein ExbB
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_156_curated_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3465..4214)
DNA (750bp) protein (250aa)
tonB1; putative TonB protein; K03832 periplasmic protein TonB id=12495232 bin=THIO_HI species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
tonB1; putative TonB protein; K03832 periplasmic protein TonB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_156_curated_5
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4259..5296)
DNA (1038bp) protein (346aa)
O-methyltransferase family protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XZU7_9RHOO
O-methyltransferase family protein {ECO:0000313|EMBL:ENO84790.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
O-methyltransferase family protein
SCNpilot_expt_1000_bf_scaffold_156_curated_6
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5333..6364)
DNA (1032bp) protein (344aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Methylomicrobium album BG8 RepID=H8GIK4_METAL
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:EIC29031.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_156_curated_7
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6382..7146)
DNA (765bp) protein (255aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component n=1 Tax=Methylomicrobium album BG8 RepID=H8GIK3_METAL
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component {ECO:0000313|EMBL:EIC29030.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
SCNpilot_expt_1000_bf_scaffold_156_curated_8
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7137..8180)
DNA (1044bp) protein (348aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Methylomicrobium album BG8 RepID=H8GIK2_METAL
ABC-type Fe3+-siderophore transport system, permease component {ECO:0000313|EMBL:EIC29029.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
iron(III) ABC transporter-permease; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_156_curated_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8177..9274)
DNA (1098bp) protein (366aa)
radical SAM protein; K01012 biotin synthetase [EC:2.8.1.6]
Radical SAM domain protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYX4_HYPDA
Radical SAM domain protein {ECO:0000313|EMBL:ADJ23576.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_10
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9415..10206)
DNA (792bp) protein (264aa)
fepC; ferric enterobactin transport ATP-binding protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter, ATP-binding protein, FepC family n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A876_PELCD
ABC transporter, ATP-binding protein, FepC family {ECO:0000313|EMBL:ABA87416.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_11
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10203..11240)
DNA (1038bp) protein (346aa)
Transport system permease n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XSQ1_9RHOO
Transport system permease {ECO:0000313|EMBL:ENO84786.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
transporter permease; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_156_curated_12
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11240..12283)
DNA (1044bp) protein (348aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HEG5_METFS
ABC-type Fe3+-hydroxamate transport system, periplasmic component
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:AGB01688.1}; Flags: Precursor;; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_13
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12283..13155)
DNA (873bp) protein (291aa)
TonB-dependent receptor n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RQZ2_ALLVD
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor {ECO:0000313|EMBL:ADC61820.1}; Flags: Precursor;; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_14

Not on your lists

comp(13159..15369)
DNA (2211bp) protein (737aa)
Putative TonB-dependent receptor n=1 Tax=mine drainage metagenome RepID=E6QAY5_9ZZZZ
Putative TonB-dependent receptor {ECO:0000313|EMBL:CBI04361.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_156_curated_15
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15491..16516)
DNA (1026bp) protein (342aa)
radical SAM protein; K01012 biotin synthetase [EC:2.8.1.6]
Radical SAM domain protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYX4_HYPDA
Radical SAM domain protein {ECO:0000313|EMBL:ADJ23576.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_16
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16538..17617)
DNA (1080bp) protein (360aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein id=12495234 bin=THIO_HI species=Methylomicrobium album genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
periplasmic binding protein
Periplasmic binding protein {ECO:0000313|EMBL:CEO88334.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
SCNpilot_expt_1000_bf_scaffold_156_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17643..19877)
DNA (2235bp) protein (745aa)
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein id=12495238 bin=THIO_HI species=Nitrobacter hamburgensis genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor {ECO:0000313|EMBL:ABE61810.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_18
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19886..20929)
DNA (1044bp) protein (348aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein id=12495234 bin=THIO_HI species=Methylomicrobium album genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Periplasmic binding protein {ECO:0000313|EMBL:CEO88334.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
periplasmic binding protein
SCNpilot_expt_1000_bf_scaffold_156_curated_19
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20961..23171)
DNA (2211bp) protein (737aa)
TonB-dependent receptor n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXY8_9BRAD
TonB-dependent receptor {ECO:0000313|EMBL:EAQ35150.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_156_curated_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23700..25418
DNA (1719bp) protein (573aa)
CRISPR-associated protein Cas4 n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035C35B9
CRISPR-associated Cas1/Cas4 family protein; K15342 CRISP-associated protein Cas1
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_156_curated_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25428..25721
DNA (294bp) protein (98aa)
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLF5_THISH
CRISPR-associated Cas2 family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_156_curated_22
unknown

Not on your lists

comp(28058..28204)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_156_curated_23
unknown

Not on your lists

comp(32597..33298)
DNA (702bp) protein (234aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_156_curated_24
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34549..36123)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8I2_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS87259.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_25
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36124..37083)
DNA (960bp) protein (320aa)
CRISPR-associated protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000368CF30
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL73518.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_26
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37073..39313)
DNA (2241bp) protein (747aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLG4_THISH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL73519.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_27
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39310..41799)
DNA (2490bp) protein (830aa)
Putative helicase (CRISPR associated) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z1U1_AZOL4
putative helicase (CRISPR associated); K07012
Putative helicase (CRISPR associated) {ECO:0000313|EMBL:CBS87256.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_156_curated_28
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42266..42472
DNA (207bp) protein (69aa)
Transcriptional regulator, AbrB family n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLG0_THISH
AbrB family transcriptional regulator
Tax=RBG_13_Deltaproteobacteria_65_10_curated
SCNpilot_expt_1000_bf_scaffold_156_curated_29
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42469..42852
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI00037B16CC
PilT domain-containing protein
Tax=RBG_13_Deltaproteobacteria_65_10_curated
SCNpilot_expt_1000_bf_scaffold_156_curated_30
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42885..43640)
DNA (756bp) protein (252aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQM6_9BURK
type 11 methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
Displaying items 1-30 of 205 in total

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