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SCNpilot_expt_500_p_scaffold_643_curated

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_643_curated_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(217..3444)
DNA (3228bp) protein (1076aa)
Tetratricopeptide repeat protein n=1 Tax=uncultured bacterium RepID=K2EXY7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13563.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_643_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3667..4065)
DNA (399bp) protein (133aa)
umuD; DNA polymerase V; K03503 DNA polymerase V [EC:3.4.21.-]
SOS-response transcriptional repressor n=2 Tax=Candidatus Actinomarina minuta RepID=S5DML4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:AIL13640.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_643_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4233..6152
DNA (1920bp) protein (640aa)
hypothetical protein n=1 Tax=Fangia hongkongensis RepID=UPI00036216C8
Uncharacterized protein {ECO:0000313|EMBL:AIL13561.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_643_curated_4
unknown

Not on your lists

comp(6585..6737)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_643_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6737..7129)
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13559.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_643_curated_6
Holospora elegans, Holospora, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7198..7770)
DNA (573bp) protein (191aa)
phosphoglycerate mutase family protein; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
phosphoglycerate mutase family protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B4D0
Putative phosphatase PhoE {ECO:0000313|EMBL:GAJ46722.1}; TaxID=1427503 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Holosporaceae; Holospora.;" source="Holospora elegans E1.;"
SCNpilot_expt_500_p_scaffold_643_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7888..8661)
DNA (774bp) protein (258aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13558.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_643_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8769..9653)
DNA (885bp) protein (295aa)
Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VIH5_NAEGR
Uncharacterized protein {ECO:0000313|EMBL:AIL13557.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K09291 nucleoprotein TPR
SCNpilot_expt_500_p_scaffold_643_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9665..10657)
DNA (993bp) protein (331aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13555.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_643_curated_10
unknown

Not on your lists

11137..11370
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_643_curated_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11371..12099
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ESY0_AMOA5
Uncharacterized protein {ECO:0000313|EMBL:AIL13553.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_643_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12174..12800
DNA (627bp) protein (209aa)
aox; alternative oxidase; K00540 [EC:1.-.-.-]
Alternative oxidase n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q164N3_ROSDO
Oxidase {ECO:0000313|EMBL:AIL13552.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_643_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12810..14300)
DNA (1491bp) protein (497aa)
ADP-heptose synthase; K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
Bifunctional protein HldE n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZAV2_9PROT
Bifunctional protein HldE {ECO:0000256|HAMAP-Rule:MF_01603, ECO:0000256|SAAS:SAAS00015122}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_643_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14310..14921)
DNA (612bp) protein (204aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00067}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Phosphoheptose isomerase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TID2_TISMK
gmhA; phosphoheptose isomerase
SCNpilot_expt_500_p_scaffold_643_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14931..15629)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ET64_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13549.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_643_curated_16
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15774..16226
DNA (453bp) protein (151aa)
Putative outer membrane lipoprotein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LEY5_9PROT
Putative outer membrane lipoprotein {ECO:0000313|EMBL:EKF07530.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
putative outer membrane lipoprotein
SCNpilot_expt_500_p_scaffold_643_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16267..16875
DNA (609bp) protein (203aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
UPI00019278EF related cluster id=4920984 bin=GWC2_Alphaproteobacteria_42_16 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
similar to superoxide dismutase
SCNpilot_expt_500_p_scaffold_643_curated_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17127..18026
DNA (900bp) protein (300aa)
LysR family transcriptional regulator n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BD8C
Uncharacterized protein {ECO:0000313|EMBL:AIL13547.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transcriptional regulator
SCNpilot_expt_500_p_scaffold_643_curated_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18109..18852
DNA (744bp) protein (248aa)
DNA repair protein RecO, putative n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BC66
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
SCNpilot_expt_500_p_scaffold_643_curated_20
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18849..21071
DNA (2223bp) protein (741aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
parC; topoisomerase IV subunit A; K02621 topoisomerase IV subunit A [EC:5.99.1.-]
DNA topoisomerase IV subunit A n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C090
SCNpilot_expt_500_p_scaffold_643_curated_21
unknown

Not on your lists

comp(21077..21415)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_643_curated_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21430..22353)
DNA (924bp) protein (308aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
Pseudouridine synthase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K8J4_9PROT
SCNpilot_expt_500_p_scaffold_643_curated_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22422..23255
DNA (834bp) protein (278aa)
Kinase {ECO:0000313|EMBL:AIL13543.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Streptomycin 6-kinase id=4937272 bin=GWC2_Alphaproteobacteria_42_16 species=Rickettsia felis genus=Rickettsia taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
streptomycin 6-kinase
SCNpilot_expt_500_p_scaffold_643_curated_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23292..23624)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B4D1
Uncharacterized protein {ECO:0000313|EMBL:AIL13542.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_643_curated_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24126..25910
DNA (1785bp) protein (595aa)
ABC-type multidrug transport system, ATPase and permease components; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EX81_9BACT
ABC transporter permease {ECO:0000313|EMBL:AIL13541.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_643_curated_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25920..26624
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2YCD9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL13540.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K09778 hypothetical protein
SCNpilot_expt_500_p_scaffold_643_curated_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26624..27895
DNA (1272bp) protein (424aa)
3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C1D4
Uncharacterized protein {ECO:0000313|EMBL:AIL13539.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_643_curated_28
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27898..28887
DNA (990bp) protein (330aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00035F67F0
SCNpilot_expt_500_p_scaffold_643_curated_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28871..29791
DNA (921bp) protein (307aa)
Lipid A biosynthesis acyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2IFP9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL13537.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
lipid A biosynthesis acyltransferase
SCNpilot_expt_500_p_scaffold_643_curated_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29906..31111
DNA (1206bp) protein (402aa)
Aspartate aminotransferase {ECO:0000313|EMBL:AIL13536.1}; EC=2.6.1.1 {ECO:0000313|EMBL:AIL13536.1};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
class I and II aminotransferase family protein; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aminotransferase class I and II family protein n=1 Tax=Micavibrio aeruginosavorus (strain ARL-13) RepID=G2KPV0_MICAA
Displaying items 1-30 of 33 in total

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