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SCNpilot_expt_500_p_scaffold_683_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_683_curated_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(187..882)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DSK5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL12956.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
cvpA; colicin V production protein; K03558 membrane protein required for colicin V production
SCNpilot_expt_500_p_scaffold_683_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(898..2256)
DNA (1359bp) protein (453aa)
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
DNA repair protein radA id=3645214 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
radA; DNA repair protein; K04485 DNA repair protein RadA/Sms
SCNpilot_expt_500_p_scaffold_683_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2258..3034)
DNA (777bp) protein (259aa)
Putative ABC transporter (ATP-binding protein) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ALL0_AZOBR
ABC transporter {ECO:0000313|EMBL:AIL12954.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative ABC transporter (ATP-binding protein)
SCNpilot_expt_500_p_scaffold_683_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3031..3807)
DNA (777bp) protein (259aa)
ABC-type transport system protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2YCP9_9PROT
ABC transporter permease {ECO:0000313|EMBL:AIL12953.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative ABC-type transporter permease involved in resistance to organic solvents
SCNpilot_expt_500_p_scaffold_683_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4273..5298
DNA (1026bp) protein (342aa)
fabK; enoyl-(acyl-carrier-protein) reductase II (EC:1.3.1.9); K02371 enoyl-[acyl carrier protein] reductase II [EC:1.3.1.-]
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000370D1FC
2-nitropropane dioxygenase {ECO:0000313|EMBL:AIL12952.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_683_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5640..6674
DNA (1035bp) protein (345aa)
Uncharacterized protein n=2 Tax=Acetobacter pasteurianus RepID=S6D6A3_ACEPA
Uncharacterized protein {ECO:0000313|EMBL:AIL12951.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_683_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6728..7969
DNA (1242bp) protein (414aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
histidyl-tRNA synthase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B1BA
histidyl-tRNA synthetase
SCNpilot_expt_500_p_scaffold_683_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7966..9045
DNA (1080bp) protein (360aa)
peptide chain release factor 1 n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B1B9
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
prfA; peptide chain release factor 1; K02835 peptide chain release factor 1
SCNpilot_expt_500_p_scaffold_683_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9045..9899
DNA (855bp) protein (285aa)
bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase (EC:2.1.1.33); K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2IPX6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12948.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_683_curated_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9896..11677)
DNA (1782bp) protein (594aa)
Aspartyl-tRNA synthetase (Fragment) n=2 Tax=Candidatus Odyssella thessalonicensis RepID=D9I360_9RICK
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:AIL12947.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
aspS; Aspartyl-tRNA synthetase
SCNpilot_expt_500_p_scaffold_683_curated_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11770..12933
DNA (1164bp) protein (388aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Ribonuclease D n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HGM7_9PROT
rnd; ribonuclease D
SCNpilot_expt_500_p_scaffold_683_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12993..13988
DNA (996bp) protein (332aa)
ABC transporter substrate-binding protein n=1 Tax=Marinobacter santoriniensis NKSG1 RepID=M7DG31_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:AIL12945.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC transporter substrate-binding protein; K01989 putative ABC transport system substrate-binding protein
SCNpilot_expt_500_p_scaffold_683_curated_13
Brucella sp. 83/13, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14157..15188
DNA (1032bp) protein (344aa)
Uncharacterized protein n=7 Tax=Brucella abortus RepID=N6ZK05_BRUAO
Putative uncharacterized protein {ECO:0000313|EMBL:EEZ31901.1}; TaxID=520449 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. 83/13.;"
ABC transporter substrate binding protein; K01989 putative ABC transport system substrate-binding protein
SCNpilot_expt_500_p_scaffold_683_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15208..16113
DNA (906bp) protein (302aa)
ABC transporter permease {ECO:0000313|EMBL:AIL12944.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Inner-membrane translocator id=3645239 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
ABC transporter permease
SCNpilot_expt_500_p_scaffold_683_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16110..16907
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EH16_9BACT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIL12943.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC-type uncharacterized transport system, ATPase component
SCNpilot_expt_500_p_scaffold_683_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17003..18037
DNA (1035bp) protein (345aa)
putative lysophospholipase L2 (Lecithinase B) (EC:3.1.1.5); K01048 lysophospholipase [EC:3.1.1.5]
Putative lysophospholipase L2 (Lecithinase B) n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7U782_DESML
Uncharacterized protein {ECO:0000313|EMBL:AIL12942.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_683_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17936..19429)
DNA (1494bp) protein (498aa)
AMP nucleosidase {ECO:0000256|HAMAP-Rule:MF_01932}; EC=3.2.2.4 {ECO:0000256|HAMAP-Rule:MF_01932};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
AMP nucleosidase (EC:3.2.2.4); K01241 AMP nucleosidase [EC:3.2.2.4]
AMP nucleosidase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BB19
SCNpilot_expt_500_p_scaffold_683_curated_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19439..20191)
DNA (753bp) protein (251aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12940.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Dsba oxidoreductase, putative id=4175667 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
com1; outer membrane protein
SCNpilot_expt_500_p_scaffold_683_curated_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20268..21653)
DNA (1386bp) protein (462aa)
Putative Zn-dependent protease n=1 Tax=Oceanibaculum indicum P24 RepID=K2IN69_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12939.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative Zn-dependent protease
SCNpilot_expt_500_p_scaffold_683_curated_20
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21629..23806)
DNA (2178bp) protein (726aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
RNAse E (EC:3.1.4.-); K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTD2_9PROT
SCNpilot_expt_500_p_scaffold_683_curated_21
unknown

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comp(23875..23988)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_683_curated_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24303..25805
DNA (1503bp) protein (501aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036EDC30
Uncharacterized protein {ECO:0000313|EMBL:AIL12938.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_683_curated_23

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25829..26797
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A005_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD54741.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UbiA prenyltransferase
SCNpilot_expt_500_p_scaffold_683_curated_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


27005..27829
DNA (825bp) protein (275aa)
30S ribosomal protein S2 n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NV35_AZOS1
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
SCNpilot_expt_500_p_scaffold_683_curated_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27865..28794
DNA (930bp) protein (310aa)
Elongation factor Ts n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SM89_RHOPH
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
tsf; elongation factor Ts; K02357 elongation factor Ts
SCNpilot_expt_500_p_scaffold_683_curated_26
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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28868..29632
DNA (765bp) protein (255aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
pyrH; uridylate kinase (EC:2.7.4.-); K09903 uridylate kinase [EC:2.7.4.22]
Uridylate kinase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LRY2_9PROT
SCNpilot_expt_500_p_scaffold_683_curated_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29634..30191
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9E2W5_9PROT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
frr; ribosome recycling factor frr; K02838 ribosome recycling factor
SCNpilot_expt_500_p_scaffold_683_curated_28
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30273..30947
DNA (675bp) protein (225aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
UDP diphosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
Isoprenyl transferase n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7JLI7_9PORP
SCNpilot_expt_500_p_scaffold_683_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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30892..31596
DNA (705bp) protein (235aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
Phosphatidate cytidylyltransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVY9_9RHIZ
SCNpilot_expt_500_p_scaffold_683_curated_30
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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31597..32031
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HNT4_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EWY40483.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
Displaying 30 items

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