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SCNpilot_expt_500_p_scaffold_2301_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2301_curated_1
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(43..255)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YSD4_9CHLB
Uncharacterized protein n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YSD4_9CHLB
hypothetical protein; K07133
hypothetical protein; K07133
SCNpilot_expt_500_p_scaffold_2301_curated_2
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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801..1079
DNA (279bp) protein (93aa)
Transposase, IS4 family n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3JDA5_NITOC
Transposase, IS4 family n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3JDA5_NITOC
transposase IS4
transposase IS4
SCNpilot_expt_500_p_scaffold_2301_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1141..1437)
DNA (297bp) protein (99aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. CBZ-4 RepID=UPI00034CC5B7
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. CBZ-4 RepID=UPI00034CC5B7
Uncharacterized protein {ECO:0000313|EMBL:AIL12601.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL12601.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2301_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1783..2115)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B507
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B507
Uncharacterized protein {ECO:0000313|EMBL:AIL12602.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL12602.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2301_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2120..2368)
DNA (249bp) protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13480.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13480.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2301_curated_6
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3094..4413
DNA (1320bp) protein (440aa)
RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L5B6_9BACI
RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L5B6_9BACI
RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313|EMBL:EGL83451.1}; TaxID=986075 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Caldalkalibacillus.;" source="Caldalkalibacillus thermarum TA2.A1.;"
RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313|EMBL:EGL83451.1}; TaxID=986075 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Caldalkalibacillus.;" source="Caldalkalibacillus thermarum TA2.A1.;"
SCNpilot_expt_500_p_scaffold_2301_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4543..8100
DNA (3558bp) protein (1186aa)
conjugal transfer protein TraA n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B77F
conjugal transfer protein TraA n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B77F
Uncharacterized protein {ECO:0000313|EMBL:AIL12605.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL12605.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2301_curated_8
unknown

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8239..8427
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2301_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8494..8868
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12608.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL12608.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2301_curated_10
unknown

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comp(8981..9484)
DNA (504bp) protein (168aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2301_curated_11
unknown

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comp(10037..10309)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2301_curated_12
unknown

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10419..10511
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2301_curated_13
unknown

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comp(10491..10619)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2301_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10633..11196)
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12861.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL12861.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2301_curated_15
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11189..12871)
DNA (1683bp) protein (561aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2FH01_9BACT
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2FH01_9BACT
conjugative transfer protein TraD
conjugative transfer protein TraD
SCNpilot_expt_500_p_scaffold_2301_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12926..13507
DNA (582bp) protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13436.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13436.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2301_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13479..15287)
DNA (1809bp) protein (603aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225AF7D
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225AF7D
Uncharacterized protein {ECO:0000313|EMBL:AIL13435.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13435.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Displaying 17 items

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