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scnpilot_cont_500_p_scaffold_394_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_394_curated_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..6319)
DNA (6318bp) protein (2106aa)
Uncharacterized protein (Fragment) n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WGC0_DELAC
Heptaprenyl diphosphate synthase component I family protein {ECO:0000313|EMBL:KFJ13522.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
Ig domain-containing protein
scnpilot_cont_500_p_scaffold_394_curated_2
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7167..8498
DNA (1332bp) protein (444aa)
D-amino-acid dehydrogenase (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino-acid dehydrogenase n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2W8E2_DELAC
D-amino-acid dehydrogenase {ECO:0000313|EMBL:EPD34475.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
scnpilot_cont_500_p_scaffold_394_curated_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8522..9757)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WKV5_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD34474.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_394_curated_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9839..10783)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WHI9_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD38766.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_394_curated_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10926..11453)
DNA (528bp) protein (176aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WP63_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD34472.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein; K09796 hypothetical protein
scnpilot_cont_500_p_scaffold_394_curated_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11550..11909)
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2W5H7_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD34471.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_394_curated_7
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12029..12691
DNA (663bp) protein (221aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRB1_DELAS
Glutathione S-transferase domain {ECO:0000313|EMBL:ABX33169.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_cont_500_p_scaffold_394_curated_8
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12708..14858)
DNA (2151bp) protein (717aa)
RecBCD enzyme subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01487};; Exonuclease V subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Helicase/nuclease RecBCD subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
exodeoxyribonuclease V subunit alpha (EC:3.1.11.5); K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Exodeoxyribonuclease V, alpha subunit n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WKV8_DELAC
scnpilot_cont_500_p_scaffold_394_curated_9
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14855..18703)
DNA (3849bp) protein (1283aa)
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
exodeoxyribonuclease V subunit beta; K03582 exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Exodeoxyribonuclease V, beta subunit n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WHJ2_DELAC
scnpilot_cont_500_p_scaffold_394_curated_10
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18700..22224)
DNA (3525bp) protein (1175aa)
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
exodeoxyribonuclease V subunit gamma; K03583 exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
Exodeoxyribonuclease V, gamma subunit n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WP58_DELAC
scnpilot_cont_500_p_scaffold_394_curated_11
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22302..22754)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2W5H3_DELAC
Membrane protein {ECO:0000313|EMBL:KEH11922.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein; K09943 hypothetical protein
scnpilot_cont_500_p_scaffold_394_curated_12
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22751..23197)
DNA (447bp) protein (149aa)
Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2W8D3_DELAC
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:KEH11921.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
BadM/Rrf2 family transcriptional regulator; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
scnpilot_cont_500_p_scaffold_394_curated_13
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23211..24407)
DNA (1197bp) protein (399aa)
NnrS family protein n=1 Tax=Chryseobacterium taeanense RepID=UPI00037430FD
Uncharacterized protein {ECO:0000313|EMBL:EPD38775.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
NnrS family protein; K07234 uncharacterized protein involved in response to NO
scnpilot_cont_500_p_scaffold_394_curated_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24529..24858
DNA (330bp) protein (110aa)
Cupin 2 conserved barrel domain protein n=3 Tax=Delftia acidovorans RepID=A9BRA5_DELAS
cupin
Uncharacterized protein {ECO:0000313|EMBL:EPD34463.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
scnpilot_cont_500_p_scaffold_394_curated_15
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25104..25778)
DNA (675bp) protein (225aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WP53_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD34462.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
two component Fis family transcriptional regulator
scnpilot_cont_500_p_scaffold_394_curated_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25820..28162)
DNA (2343bp) protein (781aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2W5G8_DELAC
multi-sensor signal transduction histidine kinase
scnpilot_cont_500_p_scaffold_394_curated_17
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28159..28842)
DNA (684bp) protein (228aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2W8C8_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD34460.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_394_curated_18
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28787..30184)
DNA (1398bp) protein (466aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
16S rRNA methyltransferase n=1 Tax=Chryseobacterium taeanense RepID=UPI00031092D5
scnpilot_cont_500_p_scaffold_394_curated_19
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30181..30810)
DNA (630bp) protein (210aa)
LemA protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WHJ8_DELAC
LemA protein {ECO:0000313|EMBL:EPD38781.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein; K03744 LemA protein
scnpilot_cont_500_p_scaffold_394_curated_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31066..35295)
DNA (4230bp) protein (1410aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=2 Tax=Delftia acidovorans RepID=S2WP47_DELAC
scnpilot_cont_500_p_scaffold_394_curated_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35319..39431)
DNA (4113bp) protein (1371aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2W5G5_DELAC
scnpilot_cont_500_p_scaffold_394_curated_22
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(39709..40086)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=5 Tax=Bacteria RepID=RL7_DELAS
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
scnpilot_cont_500_p_scaffold_394_curated_23
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(40124..40651)
DNA (528bp) protein (176aa)
50S ribosomal protein L10 n=2 Tax=Delftia acidovorans RepID=S2WKX1_DELAC
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
scnpilot_cont_500_p_scaffold_394_curated_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(40878..41573)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=2 Tax=Delftia acidovorans RepID=S2W406_DELAC
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
scnpilot_cont_500_p_scaffold_394_curated_25
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(41574..42005)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=4 Tax=Delftia RepID=RL11_DELAS
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
scnpilot_cont_500_p_scaffold_394_curated_26
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42146..42730)
DNA (585bp) protein (195aa)
Transcription termination/antitermination protein NusG n=2 Tax=Delftia acidovorans RepID=S2W5G2_DELAC
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
NusG antitermination factor; K02601 transcriptional antiterminator NusG
scnpilot_cont_500_p_scaffold_394_curated_27
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42730..43113)
DNA (384bp) protein (128aa)
Protein translocase subunit SecE n=4 Tax=Delftia RepID=A9BR92_DELAS
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
scnpilot_cont_500_p_scaffold_394_curated_28
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43285..44433)
DNA (1149bp) protein (383aa)
translation elongation factor Tu (EC:2.7.7.4); K02358 elongation factor Tu
Elongation factor Tu n=5 Tax=Delftia acidovorans RepID=S2WE70_DELAC
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
Displaying 28 items

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