ggKbase home page

SCNpilot_expt_1000_bf_scaffold_587_curated

Search features with annotation key words

Displaying items 31-60 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_587_curated_31
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28462..29130)
DNA (669bp) protein (223aa)
Putative transport transmembrane protein (Aquaporin-like) n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YY24_BRASO
transport transmembrane protein (aquaporin-like)
Major intrinsic protein {ECO:0000313|EMBL:KFC70678.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_587_curated_32
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29127..29558)
DNA (432bp) protein (144aa)
N-acetyltransferase GCN5; K00619 amino-acid N-acetyltransferase [EC:2.3.1.1]
ArsN n=1 Tax=uncultured bacterium RepID=A9XR78_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKB77470.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_587_curated_33
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29558..30085)
DNA (528bp) protein (176aa)
Putative arsenate reductase arsC-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IX80_POLGS
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:KFC70679.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
arsenate reductase
SCNpilot_expt_1000_bf_scaffold_587_curated_34
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30075..30446)
DNA (372bp) protein (124aa)
ArsR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000380961E
ArsR family transcriptional regulator {ECO:0000313|EMBL:KFL31196.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
arsR; Arsenical resistance operon repressor
SCNpilot_expt_1000_bf_scaffold_587_curated_35
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30486..31001
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCY9_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ52772.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_587_curated_36
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31066..32232
DNA (1167bp) protein (389aa)
Major facilitator superfamily protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUS4_9RHIZ
Major facilitator superfamily protein {ECO:0000313|EMBL:AJC79827.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_587_curated_37
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32353..34803
DNA (2451bp) protein (817aa)
Putative chemotaxis transducer n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R699_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08277.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative chemotaxis transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_587_curated_38
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34879..35592)
DNA (714bp) protein (238aa)
Aquaporin Z n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MIJ6_9SPHN
Major intrinsic protein {ECO:0000313|EMBL:KFC72372.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
aquaporin Z; K06188 aquaporin Z
SCNpilot_expt_1000_bf_scaffold_587_curated_39
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35709..37325)
DNA (1617bp) protein (539aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037676AA
hemolysin-type calcium-binding protein
Hemolysin-type calcium-binding region {ECO:0000313|EMBL:AEG08863.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_587_curated_40
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37440..38018)
DNA (579bp) protein (193aa)
Lytic transglycosylase, catalytic n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M773_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKC31073.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
lytic transglycosylase catalytic subunit
SCNpilot_expt_1000_bf_scaffold_587_curated_41
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38095..40014
DNA (1920bp) protein (640aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y5T5_MESOW
Putative secreted protein {ECO:0000313|EMBL:AID30386.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_42

Not on your lists

comp(40058..40519)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L3G4_HALH1
Marine sediment metagenome DNA, contig: S12H4_S21023 {ECO:0000313|EMBL:GAJ20198.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_43
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40528..41325)
DNA (798bp) protein (266aa)
Epoxide hydrolase {ECO:0000313|EMBL:CDP53304.1}; EC=3.3.2.9 {ECO:0000313|EMBL:CDP53304.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Predicted hydrolases or acyltransferases n=1 Tax=uncultured archaeon GZfos37B2 RepID=Q648N1_9ARCH
Hydrolase
SCNpilot_expt_1000_bf_scaffold_587_curated_44
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41322..42194)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003783CBE
Uncharacterized protein {ECO:0000313|EMBL:KKB10852.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative transcription regulator protein
SCNpilot_expt_1000_bf_scaffold_587_curated_45
unknown

Not on your lists

42283..42408
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_587_curated_46
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42423..43229)
DNA (807bp) protein (269aa)
Extensin family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA70_PELHB
Extensin-like protein {ECO:0000313|EMBL:CDP53308.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
extensin
SCNpilot_expt_1000_bf_scaffold_587_curated_47
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

43359..44612
DNA (1254bp) protein (418aa)
Putative xylitol oxidase n=1 Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QLE6_ARTGO
Putative xylitol oxidase {ECO:0000313|EMBL:GAB13647.1}; TaxID=1077972 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
FAD linked oxidase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_587_curated_48
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44905..46026)
DNA (1122bp) protein (374aa)
Soluble epoxide hydrolase {ECO:0000313|EMBL:KFC72489.1}; EC=3.3.2.10 {ECO:0000313|EMBL:KFC72489.1};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
putative epoxide hydrolase (EC:3.3.2.10)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003739BDB
SCNpilot_expt_1000_bf_scaffold_587_curated_49
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46078..46770)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003714D8A
Transcriptional activator FtrA {ECO:0000313|EMBL:KFC72490.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_587_curated_50
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46892..47725)
DNA (834bp) protein (278aa)
Peptidase S15 n=1 Tax=Rhodobacter sp. SW2 RepID=C8RZ02_9RHOB
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:KFC64507.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
peptidase S15; K06889
SCNpilot_expt_1000_bf_scaffold_587_curated_51
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48013..49821
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Elongation factor 4 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA71_PELHB
translation elongation factor LepA; K03596 GTP-binding protein LepA
SCNpilot_expt_1000_bf_scaffold_587_curated_52
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49827..50717)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1TBG2_9RHIZ
hypothetical protein; K07454 putative restriction endonuclease
Uncharacterized protein {ECO:0000313|EMBL:BAF89855.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_587_curated_53
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50828..51274
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0K8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36142.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_54
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51274..51738
DNA (465bp) protein (155aa)
3'''',5''''-cyclic-nucleotide phosphodiesterase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F97DF
Uncharacterized protein {ECO:0000313|EMBL:BAQ15665.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_55
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51785..52288)
DNA (504bp) protein (168aa)
Protein creA n=1 Tax=Rhizobium sp. RepID=L0NG52_RHISP
Conserved uncharacterized protein CreA {ECO:0000313|EMBL:CDP51741.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_56
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52358..52651)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00038035B2
SelT/selW/selH selenoprotein domain protein {ECO:0000313|EMBL:KFC64341.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein; K07401 selenoprotein W-related protein
SCNpilot_expt_1000_bf_scaffold_587_curated_57
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52648..53061)
DNA (414bp) protein (138aa)
3'''',5''''-cyclic-nucleotide phosphodiesterase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036A920D
Uncharacterized protein {ECO:0000313|EMBL:BAQ15665.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
cyclic nucleotide binding protein
SCNpilot_expt_1000_bf_scaffold_587_curated_58
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53131..53742)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQ63_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC64339.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_59
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53843..54802
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JX99_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:KKB76862.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_60
unknown

Not on your lists

54893..55078
DNA (186bp) protein (62aa)

This feature has no annotations

Displaying items 31-60 of 73 in total

View Taxonomy