ggKbase home page

SCNpilot_expt_1000_bf_scaffold_587_curated

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_587_curated_1
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72..1037)
DNA (966bp) protein (322aa)
Putative transcriptional regulator n=1 Tax=Acidovorax sp. CF316 RepID=J0KSZ6_9BURK
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:CDP50542.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
DeoR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_587_curated_2
unknown

Not on your lists

1132..1788
DNA (657bp) protein (219aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_587_curated_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1846..2661
DNA (816bp) protein (272aa)
N-hydroxyarylamine O-acetyltransferase {ECO:0000313|EMBL:CDP53428.1}; EC=2.3.1.118 {ECO:0000313|EMBL:CDP53428.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
N-hydroxyarylamine O-acetyltransferase (EC:2.3.1.118)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI0003657DFC
SCNpilot_expt_1000_bf_scaffold_587_curated_4
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2661..3263
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037E77A2
Uncharacterized protein {ECO:0000313|EMBL:KEC78044.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3260..3784
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=J7IVB3_DESMD
Uncharacterized protein {ECO:0000313|EMBL:KFL26303.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3781..4671
DNA (891bp) protein (297aa)
PfkB protein; K00852 ribokinase [EC:2.7.1.15]
PfkB domain-containing protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N7F5_9RHIZ
Ribokinase {ECO:0000313|EMBL:KFL32275.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_1000_bf_scaffold_587_curated_7
unknown

Not on your lists

comp(4673..5236)
DNA (564bp) protein (188aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_587_curated_8
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5311..6090)
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VGU5_CAUST
Uncharacterized protein {ECO:0000313|EMBL:KFL30692.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6264..6716
DNA (453bp) protein (151aa)
Transcriptional regulator, MarR family n=2 Tax=Agrobacterium RepID=F0L7S7_AGRSH
Uncharacterized protein {ECO:0000313|EMBL:KFL30693.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ohrR; transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_587_curated_10
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6751..7371
DNA (621bp) protein (207aa)
UPI0003CFFF07 related cluster n=1 Tax=unknown RepID=UPI0003CFFF07
Uncharacterized protein {ECO:0000313|EMBL:KKB79449.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7387..8778)
DNA (1392bp) protein (464aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
adenosylhomocysteinase; K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9F7_PELHB
SCNpilot_expt_1000_bf_scaffold_587_curated_12
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8871..9185)
DNA (315bp) protein (105aa)
Phosphocarrier protein, nitrogen regulation associated n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9F9_PELHB
Phosphocarrier protein, nitrogen regulation associ ated {ECO:0000313|EMBL:CDP53421.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
phosphocarrier protein, nitrogen regulation associated; K11189 phosphocarrier protein
SCNpilot_expt_1000_bf_scaffold_587_curated_13
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9210..9608)
DNA (399bp) protein (133aa)
PTS system fructose subfamily transporter subunit IIA; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS system fructose subfamily IIA component n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJ95_XANP2
PTS fructose transporter subunit IIA {ECO:0000313|EMBL:KFL26297.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_587_curated_14
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9677..10156)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA12_PELHB
Serine kinase of the HPr protein, regulates carboh ydrate metabolism {ECO:0000313|EMBL:CDP53423.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10160..11950)
DNA (1791bp) protein (597aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
sensor histidine kinase ChvG; K14980 two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
Sensor histidine kinase ChvG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA13_PELHB
SCNpilot_expt_1000_bf_scaffold_587_curated_16
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11957..12667)
DNA (711bp) protein (237aa)
DNA-binding response regulator ChvI n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA14_PELHB
Transcriptional regulator {ECO:0000313|EMBL:KFL32102.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
DNA-binding response regulator ChvI; K14981 two-component system, OmpR family, response regulator ChvI
SCNpilot_expt_1000_bf_scaffold_587_curated_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12920..14467
DNA (1548bp) protein (516aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
phosphoenolpyruvate carboxykinase (ATP); K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA15_PELHB
SCNpilot_expt_1000_bf_scaffold_587_curated_18
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14603..15463)
DNA (861bp) protein (287aa)
Putative signal peptide protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA16_PELHB
Cell wall hydrolyse {ECO:0000313|EMBL:CDP53295.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative signal peptide protein
SCNpilot_expt_1000_bf_scaffold_587_curated_19
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15716..16423)
DNA (708bp) protein (236aa)
HAD-superfamily hydrolase subfamily IA, variant 3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA18_PELHB
Haloacid dehalogenase {ECO:0000313|EMBL:KKB86740.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
HAD superfamily hydrolase
SCNpilot_expt_1000_bf_scaffold_587_curated_20
bacterium YEK0313, Bacteria

Not on your lists

comp(16426..16959)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2SWW4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ15606.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_587_curated_21
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17839..18957
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JGJ2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ14826.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_587_curated_22
unknown

Not on your lists

18954..19676
DNA (723bp) protein (241aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_587_curated_23
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19731..20402
DNA (672bp) protein (224aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Carboxymethylenebutenolidase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ID80_BEII9
Uncharacterized protein {ECO:0000313|EMBL:KKC34268.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_1000_bf_scaffold_587_curated_24
unknown

Not on your lists

20437..20829
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_587_curated_25
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20882..21088
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T9C2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB78712.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
stress response CbsD-like protein
SCNpilot_expt_1000_bf_scaffold_587_curated_26
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21279..24188)
DNA (2910bp) protein (970aa)
DNA polymerase I {ECO:0000313|EMBL:CDP53406.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CDP53406.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBR0_PELHB
SCNpilot_expt_1000_bf_scaffold_587_curated_27
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24287..24895)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SL97_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP78128.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_1000_bf_scaffold_587_curated_28
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25083..25691)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SL97_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP78128.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
rhtB; RhtB family transporter
SCNpilot_expt_1000_bf_scaffold_587_curated_29
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25798..26424)
DNA (627bp) protein (209aa)
Oxygen regulatory protein NreC n=1 Tax=Ahrensia sp. R2A130 RepID=E0MTC5_9RHOB
Oxygen regulatory protein NreC {ECO:0000313|EMBL:EFL87622.1}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_587_curated_30
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26494..28452
DNA (1959bp) protein (653aa)
Putative 7TM diverse intracellular signaling protein n=1 Tax=Ahrensia sp. R2A130 RepID=E0MTC4_9RHOB
Putative 7TM diverse intracellular signaling protein {ECO:0000313|EMBL:EFL87621.1}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
integral membrane sensor hybrid histidine kinase
Displaying items 1-30 of 73 in total

View Taxonomy