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SCNpilot_expt_1000_bf_scaffold_301_curated

Search features with annotation key words

Displaying items 61-90 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_301_curated_61
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57596..58687)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037D0B30
Putative DNA-binding protein {ECO:0000313|EMBL:EAS50842.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
regulatory protein LuxR
SCNpilot_expt_1000_bf_scaffold_301_curated_62
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58752..59123)
DNA (372bp) protein (124aa)
Cupin n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YSH5_9RHIZ
Cupin {ECO:0000313|EMBL:KFL29899.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cupin
SCNpilot_expt_1000_bf_scaffold_301_curated_63
unknown

Not on your lists

59302..59547
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_64
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59634..60182)
DNA (549bp) protein (183aa)
peptidase S14 ClpP; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036CF7E2
Uncharacterized protein {ECO:0000313|EMBL:KFL29437.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_65
unknown

Not on your lists

comp(60175..60411)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_66
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60413..61147)
DNA (735bp) protein (245aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00036B9DB9
Uncharacterized protein {ECO:0000313|EMBL:KKB10272.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
fnrL; transcriptional activator protein
SCNpilot_expt_1000_bf_scaffold_301_curated_67
unknown

Not on your lists

61260..61634
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_68
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61683..62780
DNA (1098bp) protein (366aa)
Membrane protein AbrB duplication n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IGP0_BEII9
membrane protein; K07120
Membrane protein AbrB duplication {ECO:0000313|EMBL:ACB95801.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_301_curated_69
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

62966..63313
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WBH5_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ45340.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_70
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63310..63723)
DNA (414bp) protein (138aa)
methionine-R-sulfoxide reductase (EC:1.8.4.12); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1195A
Methionine sulfoxide reductase B {ECO:0000313|EMBL:KKB77168.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_71
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63872..65803
DNA (1932bp) protein (644aa)
PAS sensor protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037CC572
putative two component fused sensor/regulator transcriptional regulator
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:EUB97909.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_72
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65874..66554)
DNA (681bp) protein (227aa)
Putative membrane Spanning protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R651_PELHB
putative membrane Spanning protein
Putative membrane Spanning protein {ECO:0000313|EMBL:AEQ52144.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_301_curated_73
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66666..67250)
DNA (585bp) protein (195aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB80112.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_74
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67399..68079)
DNA (681bp) protein (227aa)
SH3 type 3 domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6H9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP50165.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SH3 type 3 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_301_curated_75
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68157..68546)
DNA (390bp) protein (130aa)
acyl-CoA hydrolase; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
Acyl-CoA hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R649_PELHB
Acyl-CoA hydrolase {ECO:0000313|EMBL:KKB86609.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_76
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68543..69142)
DNA (600bp) protein (200aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21]
Thymidine kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R648_PELHB
SCNpilot_expt_1000_bf_scaffold_301_curated_77
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69525..69872
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB13511.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_78
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69850..70764)
DNA (915bp) protein (305aa)
Permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R646_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13548.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
permease of the drug/metabolite transporter (DMT) superfamily
SCNpilot_expt_1000_bf_scaffold_301_curated_79
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70772..72004)
DNA (1233bp) protein (411aa)
Aminotransferase, class V n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FPW2_PELBH
NifS {ECO:0000313|EMBL:KKC34683.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
NifS-related protein
SCNpilot_expt_1000_bf_scaffold_301_curated_80
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72149..72745)
DNA (597bp) protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL26707.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_301_curated_81
unknown

Not on your lists

72957..73835
DNA (879bp) protein (293aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_82
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73832..74257)
DNA (426bp) protein (142aa)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R645_PELHB
Inosine-5-monophosphate dehydrogenase {ECO:0000313|EMBL:KKB13253.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
inosine-5'-monophosphate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_301_curated_83
unknown

Not on your lists

comp(74347..74676)
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_84
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74817..75242
DNA (426bp) protein (142aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB86603.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_85
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75306..76508
DNA (1203bp) protein (401aa)
Aspartate aminotransferase {ECO:0000313|EMBL:KKC34719.1}; EC=2.6.1.1 {ECO:0000313|EMBL:KKC34719.1};; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
aspartate aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aspartate aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R644_PELHB
SCNpilot_expt_1000_bf_scaffold_301_curated_86

Not on your lists

comp(76575..77528)
DNA (954bp) protein (318aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=E4WMF5_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:CBI71201.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Zn-dependent oxidoreductase, NADPH:quinone reductase
SCNpilot_expt_1000_bf_scaffold_301_curated_87
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(77546..77959)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI0003760886
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEA46666.1}; Flags: Precursor;; TaxID=693661 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus veneficus (strain DSM 11195 / SNP6).;"
SCNpilot_expt_1000_bf_scaffold_301_curated_88

Not on your lists

comp(77956..78201)
DNA (246bp) protein (82aa)
Putative uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=E4WMF4_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:CBI71200.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PBSX family transcriptional regulator; K07729 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_301_curated_89

Not on your lists

comp(78201..78659)
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=E4WMF3_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:CBI71199.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_301_curated_90
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78788..79765
DNA (978bp) protein (326aa)
UPI0003CF980E related cluster n=1 Tax=unknown RepID=UPI0003CF980E
Transposase {ECO:0000313|EMBL:KJS09282.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
ISSpo8, transposase
Displaying items 61-90 of 92 in total

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