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SCNpilot_expt_1000_bf_scaffold_301_curated

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_301_curated_1
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75..1508)
DNA (1434bp) protein (478aa)
Uncharacterized protein {ECO:0000313|EMBL:EYD75245.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_2
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1864..2364
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R687_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP50200.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_301_curated_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2403..3227
DNA (825bp) protein (275aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
pyrroline-5-carboxylate reductase; K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
Pyrroline-5-carboxylate reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R686_PELHB
SCNpilot_expt_1000_bf_scaffold_301_curated_4
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3220..3558
DNA (339bp) protein (113aa)
tRNA-binding protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037408D3
Protein csaA {ECO:0000313|EMBL:CCM76632.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
export-related chaperone CsaA
SCNpilot_expt_1000_bf_scaffold_301_curated_5
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3590..3889
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I7F7_RHOVT
YARHG domain {ECO:0000313|EMBL:AKH99646.1}; Flags: Precursor;; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_301_curated_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3923..4441)
DNA (519bp) protein (173aa)
HTH-type transcriptional regulator PetP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R682_PELHB
MarR family transcriptional regulator {ECO:0000313|EMBL:KKB13283.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
HTH-type transcriptional regulator PetP
SCNpilot_expt_1000_bf_scaffold_301_curated_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4573..5460
DNA (888bp) protein (296aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KKB13284.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KKB13284.1};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Branched-chain amino acid aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R681_PELHB
SCNpilot_expt_1000_bf_scaffold_301_curated_8
Mycobacterium immunogenum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(5529..6020)
DNA (492bp) protein (164aa)
cytidine deaminase n=1 Tax=Citricoccus sp. CH26A RepID=UPI000255EBBC
Um strain SMUC14 PROKKA_contig000011, whole genome shotgun sequence {ECO:0000313|EMBL:KIU40274.1}; TaxID=83262 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium immunogenum.;"
cytidine/deoxycytidylate deaminase
SCNpilot_expt_1000_bf_scaffold_301_curated_9
unknown

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6165..6782
DNA (618bp) protein (206aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6871..8427
DNA (1557bp) protein (519aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8C3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL29215.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8479..8925)
DNA (447bp) protein (149aa)
molybdenum cofactor biosynthesis protein MoaE, molybdopterin converting factor subunit 2; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
Molybdenum cofactor biosynthesis protein MoaE, molybdopterin converting factor subunit 2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R680_PELHB
Molybdenum cofactor biosynthesis protein MoaE {ECO:0000313|EMBL:KFL26733.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_12
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8927..9178)
DNA (252bp) protein (84aa)
molybdenum cofactor biosynthesis protein MoaD n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C5CD7
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
molybdopterin converting factor subunit 1; K03636 molybdopterin synthase sulfur carrier subunit
SCNpilot_expt_1000_bf_scaffold_301_curated_13
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9175..9786)
DNA (612bp) protein (204aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R678_PELHB
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KKB86727.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_14
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9896..10966)
DNA (1071bp) protein (357aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
aroG; phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Kaistia granuli RepID=UPI00036850AA
SCNpilot_expt_1000_bf_scaffold_301_curated_15
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11154..11621)
DNA (468bp) protein (156aa)
MarR family transcriptional regulator, involved in virulence n=2 Tax=Cupriavidus RepID=L2E989_9BURK
MarR family transcriptional regulator {ECO:0000313|EMBL:AJC19601.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
slyA; MarR family transcriptional regulator, involved in virulence; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
SCNpilot_expt_1000_bf_scaffold_301_curated_16
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11680..13362
DNA (1683bp) protein (561aa)
Putative transmembrane efflux pump (Multidrug resistance related protein) n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RIN0_FRAAA
MFS transporter {ECO:0000313|EMBL:KFL28171.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transmembrane efflux protein
SCNpilot_expt_1000_bf_scaffold_301_curated_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13352..14647)
DNA (1296bp) protein (432aa)
UPI0003CE5027 related cluster n=1 Tax=unknown RepID=UPI0003CE5027
Uncharacterized protein {ECO:0000313|EMBL:KFC64898.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_301_curated_18
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14708..16585)
DNA (1878bp) protein (626aa)
UvrABC system protein C n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R677_PELHB
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C
SCNpilot_expt_1000_bf_scaffold_301_curated_19
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16582..17361)
DNA (780bp) protein (260aa)
FolM Alternative dihydrofolate reductase 1 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R676_PELHB
Short-chain dehydrogenase {ECO:0000313|EMBL:KFL26728.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
FolM Alternative dihydrofolate reductase 1
SCNpilot_expt_1000_bf_scaffold_301_curated_20
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17521..17805
DNA (285bp) protein (95aa)
Putative membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R675_PELHB
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AEQ52168.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_301_curated_21
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17866..18792
DNA (927bp) protein (309aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RQM1_RHORT
Uncharacterized protein {ECO:0000313|EMBL:KKB13273.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_1000_bf_scaffold_301_curated_22
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18740..18973)
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL26726.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_23
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19060..19500
DNA (441bp) protein (147aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC37232.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_24
unknown

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comp(19503..19727)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_25
unknown

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comp(19831..20193)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_26
unknown

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comp(20292..20648)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_27
unknown

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comp(20707..20934)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_28
unknown

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21084..21401
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_29
unknown

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21734..21835
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_30
unknown

Not on your lists

21832..22182
DNA (351bp) protein (117aa)

This feature has no annotations

Displaying items 1-30 of 92 in total

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