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SCNpilot_expt_1000_bf_scaffold_301_curated

Search features with annotation key words

Displaying items 31-60 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_301_curated_31
unknown

Not on your lists

comp(22633..23028)
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_32
unknown

Not on your lists

comp(23330..23578)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_33
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23681..25462)
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Comamonas testosteroni RepID=UPI0002F70CBB
Uncharacterized protein {ECO:0000313|EMBL:AIJ46972.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
AAA ATPase
SCNpilot_expt_1000_bf_scaffold_301_curated_34
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25777..28446)
DNA (2670bp) protein (890aa)
UvrABC system protein B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R666_PELHB
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B
SCNpilot_expt_1000_bf_scaffold_301_curated_35

Not on your lists

comp(28569..30845)
DNA (2277bp) protein (759aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FHW3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKN89362.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_301_curated_36
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31705..32730)
DNA (1026bp) protein (342aa)
Sulphatase-modifying factor protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GF95_NITSI
sulfatase-modifying factor protein
Sulphatase-modifying factor protein {ECO:0000313|EMBL:AEI99994.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
SCNpilot_expt_1000_bf_scaffold_301_curated_37
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32882..34033
DNA (1152bp) protein (384aa)
Arabinose efflux permease family protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CG91_9RHIZ
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJN05184.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_301_curated_38
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34049..35392)
DNA (1344bp) protein (448aa)
serralysin (EC:3.4.24.40); K01406 serralysin [EC:3.4.24.40]
Putative calcium-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YRE0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG67205.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_39

Not on your lists

35630..36139
DNA (510bp) protein (170aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8Z1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACF98147.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_301_curated_40
unknown

Not on your lists

comp(36382..36633)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_41
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36630..37991)
DNA (1362bp) protein (454aa)
UPI0003D024E1 related cluster n=1 Tax=unknown RepID=UPI0003D024E1
Pilus assembly protein CpaC {ECO:0000313|EMBL:ESZ38732.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
Flp pilus assembly protein, secretin CpaC
SCNpilot_expt_1000_bf_scaffold_301_curated_42
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37988..39172)
DNA (1185bp) protein (395aa)
Flp pilus assembly protein RcpC/CpaB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFS2_PELHB
Flp pilus assembly protein RcpC/CpaB {ECO:0000313|EMBL:CDP50622.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Flp pilus assembly protein RcpC/CpaB; K02279 pilus assembly protein CpaB
SCNpilot_expt_1000_bf_scaffold_301_curated_43
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39395..40447)
DNA (1053bp) protein (351aa)
Mannonate dehydratase {ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|SAAS:SAAS00189414};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
uxuAch; mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8]
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000362F78F
SCNpilot_expt_1000_bf_scaffold_301_curated_44
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40680..41618
DNA (939bp) protein (313aa)
kdgD; 5-dehydro-4-deoxyglucarate dehydratase (EC:4.2.1.41); K01707 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41]
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000255|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000255|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000255|HAMAP-Rule:MF_00694}; Short=KDGDH {ECO:0000255|HAMAP-Rule:MF_00694};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039FB208
SCNpilot_expt_1000_bf_scaffold_301_curated_45
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41618..42943
DNA (1326bp) protein (442aa)
Glucarate dehydratase {ECO:0000313|EMBL:ELS24585.1}; EC=4.2.1.40 {ECO:0000313|EMBL:ELS24585.1};; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
gudD; glucarate dehydratase (EC:4.2.1.40)
Glucarate dehydratase n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MDL6_PSEPS
SCNpilot_expt_1000_bf_scaffold_301_curated_46
unknown

Not on your lists

comp(42957..43118)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_301_curated_47
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43202..44719)
DNA (1518bp) protein (506aa)
tripartite tricarboxylate transporter TctA n=1 Tax=Rhizobium meliloti RepID=UPI0003766232
hypothetical protein; K07793 putative tricarboxylic transport membrane protein rbh
Conserved hypothetical membrane protein {ECO:0000313|EMBL:AGG72444.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
SCNpilot_expt_1000_bf_scaffold_301_curated_48
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44719..45237)
DNA (519bp) protein (173aa)
C4-dicarboxylate ABC transporter n=1 Tax=Rhizobium meliloti RepID=UPI00037839C8
Putative membrane protein {ECO:0000313|EMBL:CDH82940.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
membrane protein
SCNpilot_expt_1000_bf_scaffold_301_curated_49
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45234..46184)
DNA (951bp) protein (317aa)
Putative tricarboxylic transport membrane protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJX0_9RHIZ
Putative tricarboxylic transport membrane protein {ECO:0000313|EMBL:EHK59033.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K07795 putative tricarboxylic transport membrane protein
SCNpilot_expt_1000_bf_scaffold_301_curated_50
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46359..47435)
DNA (1077bp) protein (359aa)
Iron ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJX1_9RHIZ
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:EHK59034.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ABC-type Fe3+ transport system, periplasmic component
SCNpilot_expt_1000_bf_scaffold_301_curated_51
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47521..48192
DNA (672bp) protein (224aa)
transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI00036C53F0
Transcriptional regulator {ECO:0000313|EMBL:KFL26966.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
two-component response regulator transcriptional regulatory protein; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_1000_bf_scaffold_301_curated_52
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48189..49553
DNA (1365bp) protein (455aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
two-component sensor histidine kinase; K07649 two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000368BA83
SCNpilot_expt_1000_bf_scaffold_301_curated_53
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49630..51093
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z174_9RHIZ
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
MlrC family protein
SCNpilot_expt_1000_bf_scaffold_301_curated_54
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51106..51468)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF91_PELHB
Sulfide-quinone reductase {ECO:0000313|EMBL:CDP51650.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_301_curated_55
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51502..51711)
DNA (210bp) protein (70aa)
Uncharacterized protein n=2 Tax=Pseudovibrio RepID=G8PIP9_PSEUV
Uncharacterized protein {ECO:0000313|EMBL:KKB86186.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_301_curated_56
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51775..52092
DNA (318bp) protein (106aa)
Putative transcriptional regulatory protein, Ars family n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z3F1_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:KKC32879.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
putative transcriptional regulatory protein, Ars family
SCNpilot_expt_1000_bf_scaffold_301_curated_57
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52124..53278)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000376010C
Uncharacterized protein {ECO:0000313|EMBL:KKC34096.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
mandelate racemase/muconate lactonizing-like protein
SCNpilot_expt_1000_bf_scaffold_301_curated_58
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53367..54830)
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00037BA24E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL25720.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_301_curated_59
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54843..56864)
DNA (2022bp) protein (674aa)
hemolysin D n=1 Tax=Rhizobium meliloti RepID=UPI0003719D63
Ca2+-binding protein, RTX toxin {ECO:0000313|EMBL:EIM29889.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
probabable type I secretion target repeat protein
SCNpilot_expt_1000_bf_scaffold_301_curated_60
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57047..57583
DNA (537bp) protein (179aa)
Hypoxanthine-guanine phosphoribosyltransferase {ECO:0000313|EMBL:CDP52459.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CDP52459.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Hypoxanthine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine phosphoribosyltransferase id=2645534 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Displaying items 31-60 of 92 in total

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