ggKbase home page

SCNpilot_expt_1000_bf_scaffold_817_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_817_curated_1
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41..562
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUM5_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL57093.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_817_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(559..1131)
DNA (573bp) protein (191aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
bsdB; phenolic acid decarboxylase subunit B (EC:4.1.1.- 4.1.1.61)
Phenolic acid decarboxylase subunit B n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X927_RHIFR
SCNpilot_expt_1000_bf_scaffold_817_curated_3
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1128..2621)
DNA (1494bp) protein (498aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000313|EMBL:CCF20727.1}; EC=4.1.1.- {ECO:0000313|EMBL:CCF20727.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
ubiD; 3-octaprenyl-4-hydroxybenzoate decarboxylase (EC:4.1.1.-)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Rhizobium sp. RepID=L0NKB6_RHISP
SCNpilot_expt_1000_bf_scaffold_817_curated_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2750..3256
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AL28_RHIRD
Putative lipid carrier protein-like protein {ECO:0000313|EMBL:AHK46774.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_817_curated_5
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3247..4227
DNA (981bp) protein (327aa)
yhbU; protease YhbU (EC:3.4.-.-)
Putative protease YhbU {ECO:0000313|EMBL:AFL52380.1}; EC=3.4.-.- {ECO:0000313|EMBL:AFL52380.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Putative protease YhbU n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X924_RHIFR
SCNpilot_expt_1000_bf_scaffold_817_curated_6
Brucella sp. F5/99, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4230..5153
DNA (924bp) protein (308aa)
Peptidase U32 (Fragment) n=1 Tax=Brucella ceti M644/93/1 RepID=C9T0C6_9RHIZ
peptidase U32
Peptidase U32 {ECO:0000313|EMBL:EEY24434.1}; TaxID=437701 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. F5/99.;"
SCNpilot_expt_1000_bf_scaffold_817_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5184..5708)
DNA (525bp) protein (175aa)
mogA; molybdenum cofactor biosynthesis protein MogA; K03831 molybdopterin adenylyltransferase [EC:2.7.7.75]
Molybdopterin adenylyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20XR0_RHOPB
Molybdopterin adenylyltransferase {ECO:0000313|EMBL:KIZ45524.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_expt_1000_bf_scaffold_817_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5711..6718)
DNA (1008bp) protein (336aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUN9_METNO
molybdenum cofactor biosynthesis protein A
SCNpilot_expt_1000_bf_scaffold_817_curated_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6814..7362)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J793_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78971.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_817_curated_10
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7362..8246)
DNA (885bp) protein (295aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000370B2D9
nifM; PpiC-type peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_1000_bf_scaffold_817_curated_11
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8257..8955)
DNA (699bp) protein (233aa)
Respiratory nitrate reductase, gamma subunit {ECO:0000313|EMBL:EFM55746.1}; EC=1.7.99.4 {ECO:0000313|EMBL:EFM55746.1};; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
narI; respiratory nitrate reductase subunit gamma; K00374 nitrate reductase 1, gamma subunit [EC:1.7.99.4]
Respiratory nitrate reductase, gamma subunit n=1 Tax=Brucella inopinata BO1 RepID=E0DQE5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_817_curated_12
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8957..9670)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003823D43
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:EMG53261.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
narJ; respiratory nitrate reductase, delta subunit; K00373 nitrate reductase 1, delta subunit
SCNpilot_expt_1000_bf_scaffold_817_curated_13
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9670..11208)
DNA (1539bp) protein (513aa)
nitrate reductase subunit beta; K00371 nitrate reductase 1, beta subunit [EC:1.7.99.4]
Nitrate reductase A subunit beta n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1WUM5_9RHIZ
Nitrate reductase A subunit beta {ECO:0000313|EMBL:ERI12299.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
SCNpilot_expt_1000_bf_scaffold_817_curated_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11205..14945)
DNA (3741bp) protein (1247aa)
Nitrate reductase, alpha subunit n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TUM1_TISMK
Nitrate reductase alpha subunit protein {ECO:0000313|EMBL:CDN95754.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
narG; nitrate reductase subunit alpha
SCNpilot_expt_1000_bf_scaffold_817_curated_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14945..17695)
DNA (2751bp) protein (917aa)
Nitrite extrusion protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JU16_9PROT
Nitrite extrusion protein {ECO:0000313|EMBL:EKE78978.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
narK; nitrite transporter
SCNpilot_expt_1000_bf_scaffold_817_curated_16
unknown

Not on your lists

comp(18195..18302)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_817_curated_17
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18460..18912)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X0P7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34169.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_817_curated_18
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19026..19484
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QKE1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EPX80043.1}; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae DSM 19593.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_817_curated_19

Not on your lists

19477..20106
DNA (630bp) protein (210aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium sp. RepID=L0NDI1_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KKN86143.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_817_curated_20
bacterium YEK0313, Bacteria

Not on your lists

20211..21206
DNA (996bp) protein (332aa)
Putative component of multidrug efflux system (RND family) n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EDI6_BRASB
Multidrug export protein AcrE {ECO:0000313|EMBL:CEJ11667.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
RND family mulitdrug efflux protein
SCNpilot_expt_1000_bf_scaffold_817_curated_21
bacterium YEK0313, Bacteria

Not on your lists

21203..22285
DNA (1083bp) protein (361aa)
UPI0003CE8A14 related cluster n=1 Tax=unknown RepID=UPI0003CE8A14
Multidrug resistance protein MdtA {ECO:0000313|EMBL:CEJ11666.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
protein secretion protein
SCNpilot_expt_1000_bf_scaffold_817_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22282..25392
DNA (3111bp) protein (1037aa)
Acriflavin resistance protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUK5_RHOP2
Acriflavin resistance protein {ECO:0000313|EMBL:ABD08105.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
acriflavin resistance protein
SCNpilot_expt_1000_bf_scaffold_817_curated_23
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25548..26147
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000365526E
Wenxma_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ70775.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
DsbA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_817_curated_24
Geobacillus caldoxylosilyticus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26155..27261)
DNA (1107bp) protein (369aa)
Putative C4-dicarboxylate transporter n=1 Tax=Geobacillus thermodenitrificans (strain NG80-2) RepID=A4IT22_GEOTN
Uncharacterized protein {ECO:0000313|EMBL:GAJ39339.1}; TaxID=1220594 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus caldoxylosilyticus NBRC 107762.;"
putative C4-dicarboxylate transporter
SCNpilot_expt_1000_bf_scaffold_817_curated_25
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27248..27604)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RJL3_9RHIZ
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_expt_1000_bf_scaffold_817_curated_26

Not on your lists

comp(27644..28093)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003639CC3
Uncharacterized protein {ECO:0000313|EMBL:KKN71005.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BadM/Rrf2 family transcriptional regulator; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_817_curated_27
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28189..28650
DNA (462bp) protein (154aa)
Uncharacterized protein {ECO:0000313|EMBL:EXS70710.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
SCNpilot_expt_1000_bf_scaffold_817_curated_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28901..29749)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037EB6C0
Uncharacterized protein {ECO:0000313|EMBL:KDP72791.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
transcriptional regulator, AraC family
SCNpilot_expt_1000_bf_scaffold_817_curated_29
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29924..31456
DNA (1533bp) protein (511aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX41_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EEW26566.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
Glycyl radical enzyme
SCNpilot_expt_1000_bf_scaffold_817_curated_30
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31431..32297
DNA (867bp) protein (289aa)
Radical SAM domain protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX40_9RHOB
pflA; Pyruvate formate-lyase-activating enzyme
Tax=BJP_IG2158_Rhodobacterales_64_37
Displaying items 1-30 of 35 in total

View Taxonomy