ggKbase home page

SCNpilot_expt_1000_bf_scaffold_333_curated

Search features with annotation key words

Displaying items 121-150 of 354 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_333_curated_121
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112517..113491)
DNA (975bp) protein (325aa)
Zinc-containing alcohol dehydrogenase superfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG32_PELHB
zinc-containing alcohol dehydrogenase superfamily
Zinc-containing alcohol dehydrogenase superfamily {ECO:0000313|EMBL:AEQ52046.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_122
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113495..113713)
DNA (219bp) protein (73aa)
Transcriptional regulator, XRE family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG31_PELHB
XRE family transcriptional regulator; K07729 putative transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:AEQ52045.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_123
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113717..114148)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG30_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ52044.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_124
unknown

Not on your lists

comp(114401..114859)
DNA (459bp) protein (153aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_125
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115134..115583)
DNA (450bp) protein (150aa)
UPI0003CEAA05 related cluster n=1 Tax=unknown RepID=UPI0003CEAA05
Transposase IS1595 {ECO:0000313|EMBL:ESY28679.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
ISSpo8, transposase
SCNpilot_expt_1000_bf_scaffold_333_curated_126
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115918..116820)
DNA (903bp) protein (301aa)
Periplasmic component of the Tol biopolymer transport system n=1 Tax=Rhizobium sp. CF142 RepID=J2B603_9RHIZ
Biopolymer transporter Tol {ECO:0000313|EMBL:KKB78943.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
periplasmic component of the Tol biopolymer transport system
SCNpilot_expt_1000_bf_scaffold_333_curated_127
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117047..118702
DNA (1656bp) protein (552aa)
ABC transporter, ATP-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG15_PELHB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL29024.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_333_curated_128
unknown

Not on your lists

comp(118789..118905)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_129
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(119788..120534)
DNA (747bp) protein (249aa)
Restriction endonuclease family protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KKY5_MESAW
restriction endonuclease family protein
Restriction endonuclease family protein {ECO:0000313|EMBL:AGB45751.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_130
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

120616..121152
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Streptomyces sp. MspMP-M5 RepID=UPI00037DB668
Uncharacterized protein {ECO:0000313|EMBL:EST22349.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_333_curated_131
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121149..122396
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003651B88
Uncharacterized protein {ECO:0000313|EMBL:CDP49911.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Neutral/alkaline non-lysosomal ceramidase
SCNpilot_expt_1000_bf_scaffold_333_curated_132
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122397..123284)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003813C6B
Uncharacterized protein {ECO:0000313|EMBL:KKB07099.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_133
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123407..124225
DNA (819bp) protein (273aa)
Alpha/beta hydrolase fold protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG13_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB84943.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
alpha/beta hydrolase
SCNpilot_expt_1000_bf_scaffold_333_curated_134
unknown

Not on your lists

124328..124849
DNA (522bp) protein (174aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_135
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124857..126002
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KEM3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMG53615.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
probable GTP binding protein
SCNpilot_expt_1000_bf_scaffold_333_curated_136
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126075..126527)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJS9_9RHIZ
Host attachment protein {ECO:0000313|EMBL:KFC66397.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_137
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126693..127613
DNA (921bp) protein (307aa)
Protein rarD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG12_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC34722.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
protein rarD; K05786 chloramphenicol-sensitive protein RarD
SCNpilot_expt_1000_bf_scaffold_333_curated_138
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127613..128194
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YM33_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:EAS51548.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
MOSC domain-containing protein
SCNpilot_expt_1000_bf_scaffold_333_curated_139
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128182..129075)
DNA (894bp) protein (298aa)
Hydrogen peroxide-inducible genes activator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG11_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL27412.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hydrogen peroxide-inducible genes activator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
SCNpilot_expt_1000_bf_scaffold_333_curated_140
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129171..131348
DNA (2178bp) protein (726aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
katG; catalase (EC:1.11.1.6 1.11.1.7); K03782 catalase-peroxidase [EC:1.11.1.21]
Catalase-peroxidase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=KATG_BRASB rbh
SCNpilot_expt_1000_bf_scaffold_333_curated_141
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

131520..132647
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG09_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC66392.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_142
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132727..133674)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1MA84_METRJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB28409.1}; Flags: Precursor;; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_143
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134629..135585
DNA (957bp) protein (319aa)
Transcriptional regulator, ArsR family / methyltransferase fusion n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG08_PELHB
Transcriptional regulator, ArsR family / Methyltra nsferase fusion {ECO:0000313|EMBL:CDP50829.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ArsR family transcriptional regulator / methyltransferase fusion; K03892 ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_333_curated_144
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135582..136481
DNA (900bp) protein (300aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
5,10-methylenetetrahydrofolate reductase; K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
Methylenetetrahydrofolate reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG07_PELHB
SCNpilot_expt_1000_bf_scaffold_333_curated_145
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136609..137394
DNA (786bp) protein (262aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC66387.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_146
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137444..138163
DNA (720bp) protein (240aa)
DnaJ-like protein DjlA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG05_PELHB
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:KKB12484.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
DnaJ-like protein DjlA; K05801 DnaJ like chaperone protein
SCNpilot_expt_1000_bf_scaffold_333_curated_147
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138668..139654
DNA (987bp) protein (329aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
rRNA small subunit methyltransferase H; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG03_PELHB
SCNpilot_expt_1000_bf_scaffold_333_curated_148
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139651..140028
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG02_PELHB
Cell division protein FtsL {ECO:0000313|EMBL:CDP50808.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_149
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140028..141734
DNA (1707bp) protein (569aa)
cell division protein FtsI (peptidoglycan synthetase); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129]
Cell division protein FtsI (Peptidoglycan synthetase) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG01_PELHB
Cell division protein {ECO:0000313|EMBL:KKB12968.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_150
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141751..143190
DNA (1440bp) protein (480aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208};
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG00_PELHB
Displaying items 121-150 of 354 in total

View Taxonomy