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SCNpilot_expt_1000_bf_scaffold_333_curated

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Displaying items 1-30 of 354 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_333_curated_1
Leishmania mexicana, Leishmania, Kinetoplastida, Eukaryota

Not on your lists

comp(65..1345)
DNA (1281bp) protein (427aa)
Putative uncharacterized protein n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) RepID=E9B5R7_LEIMU
Putative uncharacterized protein {ECO:0000313|EMBL:CBZ30587.1}; TaxID=929439 species="Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania.;" source="Leishmania mexicana (strain MHOM/GT/2001/U1103).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_2
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1525..2364
DNA (840bp) protein (280aa)
2,5-diketo-D-gluconate reductase A {ECO:0000313|EMBL:CDX20415.1}; EC=1.1.1.274 {ECO:0000313|EMBL:CDX20415.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
2,5-didehydrogluconate reductase (EC:1.1.1.274)
Oxidoreductase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FCQ2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_333_curated_3
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2417..2770
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VBA7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ14240.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_4
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2727..3629)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QJU1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF61446.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_333_curated_5
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3626..4396)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XI55_DELAC
Uncharacterized protein {ECO:0000313|EMBL:KKB77129.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
MOSC domain-containing protein; K07140
SCNpilot_expt_1000_bf_scaffold_333_curated_6
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4469..4801
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4T4B4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT01012.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4798..5250)
DNA (453bp) protein (151aa)
Regulatory protein for C-P lyase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGT5_PELHB
GNAT family acetyltransferase {ECO:0000313|EMBL:KFL26691.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
regulatory protein for C-P lyase
SCNpilot_expt_1000_bf_scaffold_333_curated_8
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5319..5633
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMR4_CAUST
hypothetical protein; K09984 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG11787.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_9
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5687..6850
DNA (1164bp) protein (388aa)
Arabinose efflux permease family protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CG91_9RHIZ
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJN05184.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
arabinose efflux permease family protein
SCNpilot_expt_1000_bf_scaffold_333_curated_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6847..8388)
DNA (1542bp) protein (514aa)
Blr7934 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89C63_BRADU
Permease {ECO:0000313|EMBL:KKB85967.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_333_curated_11
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8385..9158)
DNA (774bp) protein (258aa)
ABC transporter ATP-binding protein (EC:3.6.3.-); K01990 ABC-2 type transport system ATP-binding protein
Daunorubicin resistance ATP-binding protein DrrA n=1 Tax=Ahrensia sp. R2A130 RepID=E0MLQ5_9RHOB
ABC transporter {ECO:0000313|EMBL:KKC37350.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9302..9490
DNA (189bp) protein (63aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB10108.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9551..10348)
DNA (798bp) protein (266aa)
Ribonuclease I {ECO:0000313|EMBL:CDP50135.1}; EC=3.1.27.6 {ECO:0000313|EMBL:CDP50135.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Ribonuclease; K01169 ribonuclease I (enterobacter ribonuclease) [EC:3.1.27.6]
Ribonuclease protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JY83_AGRVS
SCNpilot_expt_1000_bf_scaffold_333_curated_14
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10349..11461)
DNA (1113bp) protein (371aa)
Cyclopropane fatty acyl phospholipid synthase {ECO:0000313|EMBL:KFL26687.1}; EC=2.1.1.79 {ECO:0000313|EMBL:KFL26687.1};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane fatty acyl phospholipid synthase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QS48_9BURK
SCNpilot_expt_1000_bf_scaffold_333_curated_15
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11568..13544)
DNA (1977bp) protein (659aa)
2', 3'-cyclic nucleotide 2'-phosphodiesterase {ECO:0000313|EMBL:KFL26684.1}; EC=3.1.3.6 {ECO:0000313|EMBL:KFL26684.1};; EC=3.1.4.16 {ECO:0000313|EMBL:KFL26684.1};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
2',3'-cyclic-nucleotide 2'-phosphodiesterase; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
2',3'-cyclic-nucleotide 2'-phosphodiesterase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS8_PELHB
SCNpilot_expt_1000_bf_scaffold_333_curated_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13756..14676
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WZJ3_OCHA4
YpfJ protein, zinc metalloprotease superfamily {ECO:0000313|EMBL:CDP50130.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein; K07054
SCNpilot_expt_1000_bf_scaffold_333_curated_17
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14980..15288
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QWX6_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EEE44579.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_18
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15334..16539)
DNA (1206bp) protein (402aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
carbamoyl-phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS6_PELHB
SCNpilot_expt_1000_bf_scaffold_333_curated_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16673..17122
DNA (450bp) protein (150aa)
Transamidase GatB domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS5_PELHB
Glutamyl-tRNA amidotransferase {ECO:0000313|EMBL:KKB13006.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
transamidase GatB domain-containing protein; K09117 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_20
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17152..18039
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035DE030
aldo/keto reductase
Tax=GWF2_Verrucomicrobia_62_7_curated
SCNpilot_expt_1000_bf_scaffold_333_curated_21
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18036..19187)
DNA (1152bp) protein (384aa)
UPI0003CE5219 related cluster n=1 Tax=unknown RepID=UPI0003CE5219
MFS transporter {ECO:0000313|EMBL:KKB85959.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
arabinose efflux permease family protein
SCNpilot_expt_1000_bf_scaffold_333_curated_22
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19187..20350)
DNA (1164bp) protein (388aa)
UPI0003CF55A5 related cluster n=1 Tax=unknown RepID=UPI0003CF55A5
Uncharacterized protein {ECO:0000313|EMBL:KFL26678.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
arabinose efflux permease family protein
SCNpilot_expt_1000_bf_scaffold_333_curated_23
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20469..21038
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS4_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ52113.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_24
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21060..21626
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS4_PELHB
Putative membrane protein {ECO:0000313|EMBL:CDP50943.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_25
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21697..23640
DNA (1944bp) protein (648aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS3_PELHB
SCNpilot_expt_1000_bf_scaffold_333_curated_26
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23797..26442
DNA (2646bp) protein (882aa)
RNA polymerase sigma factor RpoD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS2_PELHB
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
SCNpilot_expt_1000_bf_scaffold_333_curated_27
Alcanivorax jadensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26525..27358
DNA (834bp) protein (278aa)
Capsular polysaccharide synthesis n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CS04_TRURR
Uncharacterized protein {ECO:0000313|EMBL:KGD61181.1}; TaxID=1177181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax jadensis T9.;"
capsular polysaccharide synthesis
SCNpilot_expt_1000_bf_scaffold_333_curated_28
GWC1_OP11_37_12, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

27355..28419
DNA (1065bp) protein (355aa)
Putative glucan-protein synthase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z2E5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KKQ24664.1}; TaxID=1618483 species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWC1_37_12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_29
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28519..28920
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000317C1A6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH89643.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_30
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28970..29275
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL31858.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
Displaying items 1-30 of 354 in total

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