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SCNpilot_expt_1000_bf_scaffold_333_curated

Search features with annotation key words

Displaying items 61-90 of 354 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_333_curated_61
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54709..55437
DNA (729bp) protein (243aa)
ABC transporter ATP-binding protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
amino acid ABC transporter ATP-binding protein n=1 Tax=Aureimonas ureilytica RepID=UPI000374829A
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EMG52090.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_62
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

55465..56631
DNA (1167bp) protein (389aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DF66_SINAD
L-alanine-DL-glutamate epimerase-like protein
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:AGA28024.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_63
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56640..57404)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375AB5E
Uncharacterized protein {ECO:0000313|EMBL:KGM32017.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_333_curated_64
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58053..58730
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000373F489
Uncharacterized protein {ECO:0000313|EMBL:ESW68729.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_65
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

58794..59978
DNA (1185bp) protein (395aa)
Carboxylesterase {ECO:0000313|EMBL:KDS87537.1}; TaxID=1906 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
beta-lactamase class C and other penicillin binding proteins id=7720189 bin=CNBR_ACT species=Microbacterium testaceum genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
beta-lactamase class C and other penicillin binding proteins
SCNpilot_expt_1000_bf_scaffold_333_curated_66

Not on your lists

60121..60945
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003608B98
Uncharacterized protein {ECO:0000313|EMBL:KKL54228.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
spermidine/putrescine ABC transporter inner membrane protein
SCNpilot_expt_1000_bf_scaffold_333_curated_67
Pseudomonas sp. GM49, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60939..61718
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036CCB22
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJM69354.1}; Flags: Precursor;; TaxID=1144331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM49.;"
potC; polyamine transport protein PotC
SCNpilot_expt_1000_bf_scaffold_333_curated_68
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61718..62800
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036644EB
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein rbh
Tax=BJP_IG2158_Rhodobacterales_69_12
SCNpilot_expt_1000_bf_scaffold_333_curated_69

Not on your lists

62802..64286
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036DB7C9
Uncharacterized protein {ECO:0000313|EMBL:KGA17985.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_333_curated_70
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64296..65381
DNA (1086bp) protein (362aa)
UPI0003CE33EE related cluster n=1 Tax=unknown RepID=UPI0003CE33EE
Uncharacterized protein {ECO:0000313|EMBL:ESY74201.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_71
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65409..66437
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037D999D
Putative Succinylglutamate desuccinylase/aspartoacylase {ECO:0000313|EMBL:KFC75709.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinylglutamate desuccinylase/aspartoacylase; K06987
SCNpilot_expt_1000_bf_scaffold_333_curated_72
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66434..67381
DNA (948bp) protein (316aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01754 threonine dehydratase [EC:4.3.1.19]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361D178
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:CDX28187.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_73
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

67378..68304
DNA (927bp) protein (309aa)
Dehydrogenase n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FBU4_VERMA
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR66410.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
dehydrogenase
SCNpilot_expt_1000_bf_scaffold_333_curated_74
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

68301..69131
DNA (831bp) protein (277aa)
Amidohydrolase 2 n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FBU2_VERMA
amidohydrolase 2; K07046
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR66409.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_75
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69318..69833)
DNA (516bp) protein (172aa)
Integrase n=2 Tax=Ketogulonicigenium vulgare RepID=E3F1U6_KETVY
Integrase {ECO:0000313|EMBL:KFI26588.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
integrase
SCNpilot_expt_1000_bf_scaffold_333_curated_76
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69885..70727)
DNA (843bp) protein (281aa)
Radical SAM superfamily enzyme n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YH67_THIV6
radical SAM family protein
Radical SAM superfamily enzyme {ECO:0000313|EMBL:AFL76335.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
SCNpilot_expt_1000_bf_scaffold_333_curated_77
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70797..71369
DNA (573bp) protein (191aa)
Lysozyme {ECO:0000256|RuleBase:RU003788}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU003788};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Phage related lysozyme; K01185 lysozyme [EC:3.2.1.17]
Lysozyme n=1 Tax=Brucella inopinata BO1 RepID=E0DRQ6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_333_curated_78
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71366..71575
DNA (210bp) protein (70aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP53098.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_79
unknown

Not on your lists

71572..71895
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_80
unknown

Not on your lists

72208..72441
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_81
unknown

Not on your lists

comp(72666..72839)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_82
unknown

Not on your lists

72891..73199
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_83
unknown

Not on your lists

73230..73556
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_84
unknown

Not on your lists

73640..73873
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_85
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74806..75291
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B136_PARDP
Uncharacterized protein {ECO:0000313|EMBL:KDP75718.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_333_curated_86
unknown

Not on your lists

comp(75358..75654)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_87
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75710..76264)
DNA (555bp) protein (185aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003600AC1
3-methyladenine DNA glycosylase
SCNpilot_expt_1000_bf_scaffold_333_curated_88
unknown

Not on your lists

comp(76301..76519)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_333_curated_89
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76605..77975
DNA (1371bp) protein (457aa)
phosphoglucomutase/phosphomannomutase subunit alpha/beta; K01840 phosphomannomutase [EC:5.4.2.8]
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI000376EF2D
Phosphomannomutase {ECO:0000313|EMBL:KFL27378.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_333_curated_90
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77972..78589)
DNA (618bp) protein (206aa)
Putative threonine efflux protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYQ0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL27379.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative threonine efflux protein
Displaying items 61-90 of 354 in total

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