ggKbase home page

SCNpilot_expt_1000_bf_scaffold_321_curated_111

Organism: scnpilot_dereplicated_Devosia_2

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: comp(106665..107921)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor containing a TPR repeat domain n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KFN0_MESAW similarity UNIREF
DB: UNIREF100
  • Identity: 60.0
  • Coverage: 408.0
  • Bit_score: 465
  • Evalue 7.60e-128
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:KFC61807.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.7
  • Coverage: 418.0
  • Bit_score: 608
  • Evalue 6.00e-171
putative RNA polymerase sigma factor containing a TPR repeat domain similarity KEGG
DB: KEGG
  • Identity: 60.0
  • Coverage: 408.0
  • Bit_score: 465
  • Evalue 2.40e-128

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Devosia sp. LC5 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1257
GTGAGCGACAGCGGCGCGGCGGCGCAGCAATCGGCGGAGCGCGCCGCCGCGCGTGTCGCGCGCGAAAGCTACGGCCGCCTCGTCGCCTTCCTCGCCGCCCGCACACGCGACGTGGCGGGCGCCGAGGACGCGCTGGGCGAGGCGTTCGCCGCGGCGCTGCGCATGTGGCCGGTCGACGGCGTGCCCGACAATCCCGACGCCTGGCTGCTCACCGTCGCACGCCGGCGCCAGACCGACGCCATTCGCCGGCGGCAGACCCGCACGGCCGGGGAGGTTCATGTGAAGCTCATCGCCGACGAGATCGAGGACGCCTCCCAGGCGCCCGATGCCATCCCCGACCGCCGCCTCGCTCTGATGTTCGCCTGCGCCCATCCCGCCATCGAACGCGGCATGCGCGCGCCCCTCATCCTCCAGACGATCCTCGGCATGACCGCCGAGGACATCTCGGCGGCCTTCCTCATCCCGCCCGCCACGATGGGCCAGCGGCTCGTCCGCGCCAAGGCGCGCATCAAGGACGCCGGCATCCCCTTCGCCATCCCCGACCCCGAGGATCTGCCGGAGCGTCTCGAGGCGGTGCTCGATGCCGTCTACGCTGCCTTCACCAAGGGCTGGTCCGAGATCGGGGACGAGGTCGTCCCGGCCATGGCCGACGAAGCCCTCTGGCTCGGCCGCCTCATCGTCTCGCTGCTGCCCGCTGAACCCGAGGCCAAGGGCATGCTGGCACTCATGCTCTATGCCGAGTCCCGCCGTGCCGCCCGCCGCGACGCTACCGGCGCTTACGTGCCACTCGAACAGCAGGACACAAGTCTCTGGGACGATTCATCGATCCGCCTGGCCGAGGCGCTGCTCCGCGAGGCCAACCGGGCCGGCCCCACCGGCCGCTACCAGCTCGAGGCCGCCATTCAATCCGCCCACACCGCGCGCCGCCTCGCCGGTCAGGACAATTGGCGCGCCATCGTCGCGCTCTACGATCACCTGCTTGCCCGGACCCATTCGCCGGTCGTCGTCCTCAACCGCGCGGTCGCCCTCGCCGAGCGCGATGGTCCCGCCGCCGCACTCTTGGCGGTCGACATCCTCGACGGTGACAGGCGGATGCAGAGCTATCAGCCCTATTGGGCCGCCATCGGTCACCTGCGCGGCCGCGCCGGCGACAAGGAGGGCGCCATCGCCGCCCTCACCGCCGCCATCGGCCTCACCGCCGACCCAGCGGTCCGCGTTTATCTTCACGCCCGCATCGCCGCCCTGCGGGACGGCTGA
PROTEIN sequence
Length: 419
VSDSGAAAQQSAERAAARVARESYGRLVAFLAARTRDVAGAEDALGEAFAAALRMWPVDGVPDNPDAWLLTVARRRQTDAIRRRQTRTAGEVHVKLIADEIEDASQAPDAIPDRRLALMFACAHPAIERGMRAPLILQTILGMTAEDISAAFLIPPATMGQRLVRAKARIKDAGIPFAIPDPEDLPERLEAVLDAVYAAFTKGWSEIGDEVVPAMADEALWLGRLIVSLLPAEPEAKGMLALMLYAESRRAARRDATGAYVPLEQQDTSLWDDSSIRLAEALLREANRAGPTGRYQLEAAIQSAHTARRLAGQDNWRAIVALYDHLLARTHSPVVVLNRAVALAERDGPAAALLAVDILDGDRRMQSYQPYWAAIGHLRGRAGDKEGAIAALTAAIGLTADPAVRVYLHARIAALRDG*