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SCNpilot_expt_1000_bf_scaffold_321_curated

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Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_321_curated_1
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75..443)
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP50332.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

648..1340
DNA (693bp) protein (231aa)
cAMP-binding protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L2V4_9RHIZ
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:KKB84287.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Crp/Fnr family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_321_curated_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1448..1681)
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP50329.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1758..2198)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JN88_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDP50327.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_321_curated_5
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2200..2598)
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Bartonella tamiae RepID=J1K3K9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB80245.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
DNA gyrase subunit B
SCNpilot_expt_1000_bf_scaffold_321_curated_6
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2740..2895)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9D6_PHEZH
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_1000_bf_scaffold_321_curated_7
unknown

Not on your lists

comp(2912..3079)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_321_curated_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3221..4099)
DNA (879bp) protein (293aa)
transglutaminase n=1 Tax=Rhizobium loti RepID=UPI00035CD969
Transglutaminase {ECO:0000313|EMBL:KKB11900.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
protein containing transglutaminase-like domain cysteine protease
SCNpilot_expt_1000_bf_scaffold_321_curated_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4105..6513)
DNA (2409bp) protein (803aa)
UPI0003CDDDB1 related cluster n=1 Tax=unknown RepID=UPI0003CDDDB1
Uncharacterized protein {ECO:0000313|EMBL:KKB11899.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_321_curated_10
Pseudomonas amygdali, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6584..6910)
DNA (327bp) protein (109aa)
hypothetical protein; K07171 mRNA interferase [EC:3.1.-.-]
Uncharacterized protein n=5 Tax=Pseudomonas syringae group RepID=Q48B48_PSE14
Uncharacterized protein {ECO:0000313|EMBL:EGH05150.1}; TaxID=629258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas amygdali.;" source="Pseudomonas amygdali pv. aesculi str. 0893_23.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_11
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6907..7170)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RRJ4_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI74787.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter arcticus 238.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_12
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7217..10543)
DNA (3327bp) protein (1109aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BK54_9RHIZ
IMP dehydrogenase {ECO:0000313|EMBL:KKB11898.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative transglutaminase domain protein
SCNpilot_expt_1000_bf_scaffold_321_curated_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10630..11565
DNA (936bp) protein (312aa)
UPI0003CEA08F related cluster n=1 Tax=unknown RepID=UPI0003CEA08F
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:ESW87004.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_14
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11694..12851
DNA (1158bp) protein (386aa)
Extracellular solute-binding protein family 1 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FB37_9RHIZ
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:EHS49949.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
family 1 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_321_curated_15
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12941..13942
DNA (1002bp) protein (334aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium loti RepID=UPI0003799250
ABC transporter family protein {ECO:0000313|EMBL:AID34197.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_321_curated_16
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13939..14892
DNA (954bp) protein (318aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3M9_9RHIZ
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KGF68265.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
binding-protein-dependent transport system inner membrane protein
SCNpilot_expt_1000_bf_scaffold_321_curated_17
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14882..15697
DNA (816bp) protein (272aa)
ABC transporter integral membrane protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3N0_9RHIZ
ABC transporter integral membrane protein {ECO:0000313|EMBL:EHK52407.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_321_curated_18
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15720..17147
DNA (1428bp) protein (476aa)
gamma-aminobutyraldehyde dehydrogenase; K00137 aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
Betaine-aldehyde dehydrogenase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JAH8_AGRRK
Putative aldehyde dehydrogenase {ECO:0000313|EMBL:GAJ94233.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_19
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17193..18671)
DNA (1479bp) protein (493aa)
multiple polyol-specific dehydrogenase; K00045 mannitol 2-dehydrogenase [EC:1.1.1.67]
Multiple polyol-specific dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDX1_PELHB
Mannitol dehydrogenase {ECO:0000313|EMBL:KKC36562.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_20
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18770..19555)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00031A5C28
Uncharacterized protein {ECO:0000313|EMBL:KKB80489.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_321_curated_21
unknown

Not on your lists

comp(19737..20264)
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_321_curated_22
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20391..21227)
DNA (837bp) protein (279aa)
thiosulfate sulfurtransferase; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
3-mercaptopyruvate sulfurtransferase n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CD74_9RHOB
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_23
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21237..22544)
DNA (1308bp) protein (436aa)
Sulfatase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8E5_MESCW
sulfatase
Sulfatase {ECO:0000313|EMBL:ADV10601.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_321_curated_24
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22747..23814)
DNA (1068bp) protein (356aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ABC transporter, ATP-binding protein (Sulfate) n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98H21_RHILO
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_321_curated_25
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23817..24605)
DNA (789bp) protein (263aa)
UPI0003D023E4 related cluster n=1 Tax=unknown RepID=UPI0003D023E4
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KKB08419.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_321_curated_26
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24602..25543)
DNA (942bp) protein (314aa)
acriflavin resistance protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00037B9F42
ABC transporter permease protein {ECO:0000313|EMBL:CDP50316.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative spermidine/putrescine transport system, permease protein
SCNpilot_expt_1000_bf_scaffold_321_curated_27
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25545..26654)
DNA (1110bp) protein (370aa)
Iron ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FLZ4_9RHIZ
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB80232.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
family 1 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_321_curated_28
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27096..28340
DNA (1245bp) protein (415aa)
Possible iron-regulated protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKF4_MOBAS
Peptidase {ECO:0000313|EMBL:KFL31650.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative iron-regulated protein; K07231 putative iron-regulated protein
SCNpilot_expt_1000_bf_scaffold_321_curated_29
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28431..29942
DNA (1512bp) protein (504aa)
Possible thiol oxidoreductase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKF5_MOBAS
Thiol oxidoreductase {ECO:0000313|EMBL:KKC36576.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
thiol oxidoreductase
SCNpilot_expt_1000_bf_scaffold_321_curated_30
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29943..31019
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036AD657
Peptidase M75, Imelysin {ECO:0000313|EMBL:KFC62560.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
peptidase M75, Imelysin; K07338 hypothetical protein
Displaying items 1-30 of 120 in total

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