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SCNpilot_expt_1000_bf_scaffold_321_curated

Search features with annotation key words

Displaying items 91-120 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_321_curated_91
unknown

Not on your lists

92634..92828
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_321_curated_92
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92828..93358
DNA (531bp) protein (177aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6P0_PELHB
SCNpilot_expt_1000_bf_scaffold_321_curated_93
unknown

Not on your lists

comp(93388..93552)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_321_curated_94
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93873..94703)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNR4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29165.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_321_curated_95
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94768..95046)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALE11 RepID=UPI000372C851
uhpA; response regulator UhpA
Response regulator TtrR {ECO:0000313|EMBL:EGV50916.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
SCNpilot_expt_1000_bf_scaffold_321_curated_96
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95135..95491)
DNA (357bp) protein (119aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP50218.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_97
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95496..96056)
DNA (561bp) protein (187aa)
MaoC-like dehydratase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6N6_PELHB
MaoC-like dehydratase {ECO:0000313|EMBL:CDP50217.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
acyl dehydratase MaoC
SCNpilot_expt_1000_bf_scaffold_321_curated_98
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96053..96547)
DNA (495bp) protein (165aa)
MaoC domain protein dehydratase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6N5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13532.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
acyl dehydratase MaoC
SCNpilot_expt_1000_bf_scaffold_321_curated_99
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96690..98183
DNA (1494bp) protein (498aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMA4_9RHIZ
ATP-binding protein {ECO:0000313|EMBL:KFL25844.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein; K06915
SCNpilot_expt_1000_bf_scaffold_321_curated_100
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98206..98508)
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7F845_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL26755.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_321_curated_101
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98576..99007)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XD85_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU50523.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_321_curated_102
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

99083..99613
DNA (531bp) protein (177aa)
Putative transcriptional regulator n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YV14_NOCFA
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:BAD57977.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
SCNpilot_expt_1000_bf_scaffold_321_curated_103
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99829..101787
DNA (1959bp) protein (653aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETJ0_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:EYR78294.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_321_curated_104
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(101803..102237)
DNA (435bp) protein (145aa)
Putative magnesium transporter-C family protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGD5_NITGG
Putative membrane protein {ECO:0000313|EMBL:AIF85109.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
magnesium transporter-C family protein
SCNpilot_expt_1000_bf_scaffold_321_curated_105
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102266..103363)
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6M9_PELHB
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
GTP-binding and nucleic acid-binding protein YchF; K06942
SCNpilot_expt_1000_bf_scaffold_321_curated_106
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103504..104253)
DNA (750bp) protein (250aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
peptidyl-tRNA hydrolase; K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
Peptidyl-tRNA hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6M7_PELHB
SCNpilot_expt_1000_bf_scaffold_321_curated_107
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(104308..104961)
DNA (654bp) protein (218aa)
50S ribosomal protein L25 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R695_PELHB
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
50S ribosomal protein L25; K02897 large subunit ribosomal protein L25
SCNpilot_expt_1000_bf_scaffold_321_curated_108
unknown

Not on your lists

105166..105540
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_321_curated_109
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105544..105933)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PJD6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ELX11717.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_321_curated_110
unknown

Not on your lists

106059..106550
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_321_curated_111
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106665..107921)
DNA (1257bp) protein (419aa)
Putative RNA polymerase sigma factor containing a TPR repeat domain n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KFN0_MESAW
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:KFC61807.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
putative RNA polymerase sigma factor containing a TPR repeat domain
SCNpilot_expt_1000_bf_scaffold_321_curated_112
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107918..108259)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000363D657
Uncharacterized protein {ECO:0000313|EMBL:KFL31964.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_321_curated_113
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108355..108711)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000363D657
PhnB protein {ECO:0000313|EMBL:KFC61809.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
YCII-like protein
SCNpilot_expt_1000_bf_scaffold_321_curated_114
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108825..109172)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VSD2_9RHIZ
DGPF domain protein {ECO:0000313|EMBL:CDP50208.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
YciI-related domain-containing protein
SCNpilot_expt_1000_bf_scaffold_321_curated_115
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109295..110227)
DNA (933bp) protein (311aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R693_PELHB
SCNpilot_expt_1000_bf_scaffold_321_curated_116
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110395..111168)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R692_PELHB
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein; K05810 conserved hypothetical protein
SCNpilot_expt_1000_bf_scaffold_321_curated_117
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111168..112244)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R691_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL26744.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_321_curated_118
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112237..113052)
DNA (816bp) protein (272aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
Prolipoprotein diacylglyceryl transferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R690_PELHB
SCNpilot_expt_1000_bf_scaffold_321_curated_119
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113184..113441
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R689_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC37364.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_321_curated_120
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113438..114160
DNA (723bp) protein (241aa)
Putative DNA repair protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X7I0_RHIFR
Uncharacterized protein {ECO:0000313|EMBL:KFL26741.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
DNA repair protein
Displaying items 91-120 of 120 in total

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