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SCNpilot_cont_1000_bf_scaffold_34_curated

Search features with annotation key words

Displaying items 1-30 of 342 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_34_curated_1
unknown

Not on your lists

2..76
DNA (75bp) protein (25aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_34_curated_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(450..1196)
DNA (747bp) protein (249aa)
fabG; 3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-oxoacyl-(Acyl-carrier protein) reductase n=2 Tax=Agrobacterium RepID=A9CFQ0_AGRT5
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KKB11042.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_cont_1000_bf_scaffold_34_curated_3
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(1234..2115)
DNA (882bp) protein (294aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1J8_SPHTD
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACZ38115.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_cont_1000_bf_scaffold_34_curated_4
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(2112..3056)
DNA (945bp) protein (315aa)
ABC-transport protein, membrane component n=2 Tax=Saccharopolyspora erythraea RepID=A4F975_SACEN
ABC transporter permease; K02033 peptide/nickel transport system permease protein
Putative ABC transporter permease protein {ECO:0000313|EMBL:BAL99163.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SCNpilot_cont_1000_bf_scaffold_34_curated_5
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3111..4682)
DNA (1572bp) protein (524aa)
Peptide/nickel transport system substrate-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P1N6_AZOS1
peptide/nickel transport system substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Peptide/nickel transport system substrate-binding protein {ECO:0000313|EMBL:BAI74565.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_cont_1000_bf_scaffold_34_curated_6
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4775..5773)
DNA (999bp) protein (333aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARP4_RUBXD
oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein; K02032 peptide/nickel transport system ATP-binding protein
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein {ECO:0000313|EMBL:ABG05934.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
SCNpilot_cont_1000_bf_scaffold_34_curated_7
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5770..6792)
DNA (1023bp) protein (341aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit (EC:3.6.3.27)
Peptide ABC transporter substrate-binding protein n=1 Tax=Mycobacterium neoaurum VKM Ac-1815D RepID=V5X5T4_MYCNE
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:CDO23282.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
SCNpilot_cont_1000_bf_scaffold_34_curated_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6808..7980)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037587D4
Mandelate racemase {ECO:0000313|EMBL:KKB85172.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
mandelate racemase/muconate lactonizing protein
SCNpilot_cont_1000_bf_scaffold_34_curated_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8127..9170)
DNA (1044bp) protein (348aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MN31_9RHIZ
Peptidase M14 {ECO:0000313|EMBL:KKB85177.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
succinylglutamatedesuccinylase/aspartoacylase; K06987
SCNpilot_cont_1000_bf_scaffold_34_curated_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9249..9992)
DNA (744bp) protein (248aa)
GntR family transcriptional regulator n=1 Tax=Erwinia toletana RepID=UPI00034A23BE
GntR family transcriptional regulator {ECO:0000313|EMBL:KKB85178.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
GntR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_34_curated_11
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10142..11185)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031F844E
Uncharacterized protein {ECO:0000313|EMBL:EDL59971.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
succinylglutamate desuccinylase/aspartoacylase; K06987
SCNpilot_cont_1000_bf_scaffold_34_curated_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11321..12073)
DNA (753bp) protein (251aa)
Transcriptional regulator, GntR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UA63_SINMW
Uncharacterized protein {ECO:0000313|EMBL:KKB85182.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
GntR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_34_curated_13
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12281..13096
DNA (816bp) protein (272aa)
Putative Nucleoside-diphosphate-sugar epimerase n=10 Tax=Vibrio nigripulchritudo RepID=U4KBR8_9VIBR
putative Nucleoside-diphosphate-sugar epimerase
Putative Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:CCO60247.1}; TaxID=28173 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo.;"
SCNpilot_cont_1000_bf_scaffold_34_curated_14
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13127..14302)
DNA (1176bp) protein (392aa)
Mandelate racemase/muconate lactonizing enzyme n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3HKK2_RHOS4
mandelate racemase/muconate lactonizing protein
Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence {ECO:0000313|EMBL:ABA81742.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_cont_1000_bf_scaffold_34_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14465..15949
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M973_9RHIZ
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MlrC domain-containing protein
SCNpilot_cont_1000_bf_scaffold_34_curated_16
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15985..16992)
DNA (1008bp) protein (336aa)
ABC di/oligopeptide transporter, ATPase subunit n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3HKK7_RHOS4
ABC di/oligopeptide transporter, ATPase subunit; K02032 peptide/nickel transport system ATP-binding protein
ABC di/oligopeptide transporter, ATPase subunit {ECO:0000313|EMBL:EKF18634.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_1000_bf_scaffold_34_curated_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16989..17996)
DNA (1008bp) protein (336aa)
ABC di/oligopeptide transporter, ATPase subunit n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N376_9RHIZ
ABC di/oligopeptide transporter, ATPase subunit {ECO:0000313|EMBL:EKF18633.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
oligopeptide/dipeptide ABC transporter, ATPase subunit; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_1000_bf_scaffold_34_curated_18
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18109..18846)
DNA (738bp) protein (246aa)
GntR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MD37_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EKF18645.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
pdhR; GntR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_34_curated_19
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19006..20583
DNA (1578bp) protein (526aa)
Extracellular solute-binding protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LLM9_9RHIZ
Extracellular solute-binding protein {ECO:0000313|EMBL:EKF18644.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
extracellular solute-binding protein
SCNpilot_cont_1000_bf_scaffold_34_curated_20
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20685..21632
DNA (948bp) protein (316aa)
Dipeptide transport system permease protein DppB n=1 Tax=Rhodobacter sp. AKP1 RepID=L1K7J4_9RHOB
Dipeptide transport system permease protein DppB {ECO:0000313|EMBL:EKX56771.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
ABC di/oligopeptide transporter, inner membrane subunit
SCNpilot_cont_1000_bf_scaffold_34_curated_21
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21595..22530
DNA (936bp) protein (312aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MN32_9RHIZ
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EKF18642.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
SCNpilot_cont_1000_bf_scaffold_34_curated_22
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22545..23045)
DNA (501bp) protein (167aa)
transcriptional regulator n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002DCEEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK56870.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_1000_bf_scaffold_34_curated_23
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(23120..25096)
DNA (1977bp) protein (659aa)
X-Pro dipeptidyl-peptidase domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5R9_SPHTD
X-Pro dipeptidyl-peptidase domain-containing protein; K06978
X-Pro dipeptidyl-peptidase domain protein {ECO:0000313|EMBL:ACZ39471.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_cont_1000_bf_scaffold_34_curated_24
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25100..26161)
DNA (1062bp) protein (354aa)
atm:ANT_09810 threonine aldolase (EC:4.1.2.5); K01620 threonine aldolase [EC:4.1.2.5] id=1246545 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5]
Threonine aldolase {ECO:0000313|EMBL:BAF87921.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_1000_bf_scaffold_34_curated_25
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26169..27800)
DNA (1632bp) protein (544aa)
Putative hydantoinase B n=1 Tax=Bordetella bronchiseptica (strain MO149) RepID=K0MUW3_BORBM
Uncharacterized protein {ECO:0000313|EMBL:ETW98621.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hydantoinase B
SCNpilot_cont_1000_bf_scaffold_34_curated_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27797..29875)
DNA (2079bp) protein (693aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14]
methylhydantoinase n=1 Tax=Roseomonas sp. B5 RepID=UPI000315BEF0
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_cont_1000_bf_scaffold_34_curated_27
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30104..30994)
DNA (891bp) protein (297aa)
oxidoreductase; K00540 [EC:1.-.-.-] rbh
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WHJ8_9SPHN
Oxidoreductase {ECO:0000313|EMBL:EZP79367.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_cont_1000_bf_scaffold_34_curated_28
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31129..31782
DNA (654bp) protein (218aa)
Putative membrane protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HT88_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EJN05141.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_34_curated_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31872..32717)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHY4_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP54203.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_34_curated_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32858..33889)
DNA (1032bp) protein (344aa)
LacI family transcription regulator n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HE83_RHIRD
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
LacI family transcription regulator {ECO:0000313|EMBL:EHJ96488.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
Displaying items 1-30 of 342 in total

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