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SCNpilot_cont_1000_bf_scaffold_9_curated

Search features with annotation key words

Displaying items 1-30 of 834 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_9_curated_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130..756)
DNA (627bp) protein (209aa)
Probable intracellular septation protein A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R703_PELHB
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative intracellular septation protein; K06190 intracellular septation protein
SCNpilot_cont_1000_bf_scaffold_9_curated_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(757..1809)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F11F8C
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
signal recognition particle receptor protein FtsY (alpha subunit); K03110 fused signal recognition particle receptor
SCNpilot_cont_1000_bf_scaffold_9_curated_3
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1809..3074)
DNA (1266bp) protein (422aa)
MiaB family protein, possibly involved in tRNA or rRNA modification n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R701_PELHB
MiaB family protein, possibly involved in tRNA or rRNA modification {ECO:0000313|EMBL:KFC68578.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
MiaB family protein, possibly involved in tRNA or rRNA modification
SCNpilot_cont_1000_bf_scaffold_9_curated_4
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3071..3928)
DNA (858bp) protein (286aa)
diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
Diaminopimelate epimerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R700_PELHB
SCNpilot_cont_1000_bf_scaffold_9_curated_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4212..5825
DNA (1614bp) protein (538aa)
Signal recognition particle protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z9_PELHB
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
signal recognition particle, subunit Ffh SRP54; K03106 signal recognition particle subunit SRP54
SCNpilot_cont_1000_bf_scaffold_9_curated_6
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5863..6219
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036826C5
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
SCNpilot_cont_1000_bf_scaffold_9_curated_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6221..6760
DNA (540bp) protein (180aa)
Ribosome maturation factor RimM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z7_PELHB
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
SCNpilot_cont_1000_bf_scaffold_9_curated_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6757..7437
DNA (681bp) protein (227aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
tRNA (Guanine37-N1) -methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z6_PELHB
SCNpilot_cont_1000_bf_scaffold_9_curated_9
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7475..7822)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0003813C3D
Uncharacterized protein {ECO:0000313|EMBL:CDM61582.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
copper resistance protein CopC; K07156
SCNpilot_cont_1000_bf_scaffold_9_curated_10
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7835..8398)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V4P6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKC33060.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein; K09796 hypothetical protein
SCNpilot_cont_1000_bf_scaffold_9_curated_11
unknown

Not on your lists

comp(8447..8800)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_9_curated_12
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9007..9510
DNA (504bp) protein (168aa)
50S ribosomal protein L19 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z5_PELHB
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_1000_bf_scaffold_9_curated_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9570..10187
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000360596F
Uncharacterized protein {ECO:0000313|EMBL:KKB13220.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_cont_1000_bf_scaffold_9_curated_14
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

10217..11023
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000382E3A5
beta-lactamase-like protein
Tax=RBG_16_Chloroflexi_57_11_curated
SCNpilot_cont_1000_bf_scaffold_9_curated_15
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11167..11901
DNA (735bp) protein (245aa)
UPI0003CFC497 related cluster n=1 Tax=unknown RepID=UPI0003CFC497
Uncharacterized protein {ECO:0000313|EMBL:KFL24862.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transcriptional regulator PadR-like family protein
SCNpilot_cont_1000_bf_scaffold_9_curated_16
unknown

Not on your lists

11933..12145
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_9_curated_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12218..15124
DNA (2907bp) protein (969aa)
Probable ferredoxin n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NTM7_CHRVO
Predicted D-lactate dehydrogenase, Fe-S protein, F AD/FMN-containing {ECO:0000313|EMBL:CDP53816.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ferredoxin rbh
SCNpilot_cont_1000_bf_scaffold_9_curated_18
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15114..16172
DNA (1059bp) protein (353aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CDP53815.1}; EC=2.1.1.- {ECO:0000313|EMBL:CDP53815.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
23S rRNA (uracil-5-) -methyltransferase RumA; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA33_PELHB
SCNpilot_cont_1000_bf_scaffold_9_curated_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16312..17772
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7KP73_METC4
Selenoprotein O {ECO:0000313|EMBL:KKB13358.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_9_curated_20
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17724..19769)
DNA (2046bp) protein (682aa)
Adenylate cyclase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A7L9_RHIFH
Adenylate/guanylate cyclase with Chase sensor {ECO:0000313|EMBL:KFC71038.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
cyaD2; adenylate cyclase
SCNpilot_cont_1000_bf_scaffold_9_curated_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19812..20627)
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CYG4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CDP53309.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_9_curated_22
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20840..21226
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AHI5_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCF00517.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_1000_bf_scaffold_9_curated_23
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21231..21695)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00037EEFB4
Uncharacterized protein {ECO:0000313|EMBL:KFL32328.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cyclic nucleotide binding protein
SCNpilot_cont_1000_bf_scaffold_9_curated_24
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21804..23612)
DNA (1809bp) protein (603aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:KFL26474.1}; EC=4.2.1.9 {ECO:0000313|EMBL:KFL26474.1};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAR5_PELHB
SCNpilot_cont_1000_bf_scaffold_9_curated_25
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23687..24727)
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000376EE64
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CDP50747.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
transcriptional regulatory protein
SCNpilot_cont_1000_bf_scaffold_9_curated_26
unknown

Not on your lists

24935..25309
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_9_curated_27
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25564..26691
DNA (1128bp) protein (376aa)
Acyltransferase 3 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) PF5_XANP2">RepID=A7IPF5_XANP2
acyltransferase 3
Acyltransferase 3 {ECO:0000313|EMBL:ABS69901.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_1000_bf_scaffold_9_curated_28
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26753..27880
DNA (1128bp) protein (376aa)
Putative acyltransferase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q3R5_RHIE6
Uncharacterized protein {ECO:0000313|EMBL:KKB85788.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative acyltransferase
SCNpilot_cont_1000_bf_scaffold_9_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27877..28596)
DNA (720bp) protein (240aa)
Oligopeptide transport ATP-binding protein OppF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPR3_9RHIZ
Oligopeptide ABC transport system ATP-binding protein OppF {ECO:0000313|EMBL:EYR79252.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
peptide/nickel transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_1000_bf_scaffold_9_curated_30
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28593..29435)
DNA (843bp) protein (281aa)
Dipeptide transport ATP-binding protein DppD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS97_9RHIZ
Dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AHK46831.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ABC transporter-like protein; K02031 peptide/nickel transport system ATP-binding protein
Displaying items 1-30 of 834 in total

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