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SCNpilot_cont_300_bf_scaffold_386_curated

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Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_386_curated_1
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..225)
DNA (225bp) protein (75aa)
conjugal transfer protein TraB n=1 Tax=Empedobacter brevis RepID=UPI000360DD20
Uncharacterized protein {ECO:0000313|EMBL:EEI90725.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
SCNpilot_cont_300_bf_scaffold_386_curated_2
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(238..1005)
DNA (768bp) protein (256aa)
conjugal transfer protein TraA n=1 Tax=Empedobacter brevis RepID=UPI000368C72F
Conjugal transfer protein TraA {ECO:0000313|EMBL:KEQ31107.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
chromosome partitioning ATPase
SCNpilot_cont_300_bf_scaffold_386_curated_3
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1509..1943
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00037B2646
Uncharacterized protein {ECO:0000313|EMBL:EEI92798.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_386_curated_4
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1948..3210
DNA (1263bp) protein (421aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FW19_9SPHI
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EEI92799.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
relaxase/mobilization nuclease
SCNpilot_cont_300_bf_scaffold_386_curated_5
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3221..3781)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W930_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK35941.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
P-loop containing nucleoside triphosphate hydrolase
SCNpilot_cont_300_bf_scaffold_386_curated_6
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3803..4645)
DNA (843bp) protein (281aa)
Transcriptional regulator, AraC family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JIP9_9BACT
Contig38, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77350.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_386_curated_7
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4769..5782
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI0003757C0B
Contig38, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77343.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
alcohol dehydrogenase
SCNpilot_cont_300_bf_scaffold_386_curated_8
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6016..6861
DNA (846bp) protein (282aa)
regulatory protein RteC family protein n=1 Tax=Empedobacter brevis RepID=UPI000379B377
Tetracycline regulation of excision, RteC {ECO:0000313|EMBL:KFC17914.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
RteC protein
SCNpilot_cont_300_bf_scaffold_386_curated_9
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6964..7416
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI0003643481
Histidine kinase {ECO:0000313|EMBL:KGO11301.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_386_curated_10
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7640..10537)
DNA (2898bp) protein (966aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000381FB28
AsmA family protein {ECO:0000313|EMBL:CEJ69308.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
AsmA family protein
SCNpilot_cont_300_bf_scaffold_386_curated_11
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10641..10997)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CDG4_9FLAO
Ribonuclease inhibitor {ECO:0000313|EMBL:KIC61186.1}; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_386_curated_12
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11011..14706)
DNA (3696bp) protein (1232aa)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8J3_9FLAO
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:CEJ68831.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain-containing protein
SCNpilot_cont_300_bf_scaffold_386_curated_13
Chryseobacterium formosense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14845..16272)
DNA (1428bp) protein (476aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=236814 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium formosense.;"
adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2]
Adenylosuccinate lyase n=1 Tax=Chryseobacterium sp. CF314 RepID=J2SUF0_9FLAO
SCNpilot_cont_300_bf_scaffold_386_curated_14
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16431..16814
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2SXT9_9FLAO
Magnesium transporter {ECO:0000313|EMBL:KFC22789.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
ApaG protein; K06195 ApaG protein
SCNpilot_cont_300_bf_scaffold_386_curated_15
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16947..17501)
DNA (555bp) protein (185aa)
DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III subunit epsilon n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X498_FLAB3
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:KFC20297.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
SCNpilot_cont_300_bf_scaffold_386_curated_16
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17506..18423)
DNA (918bp) protein (306aa)
Glycosyltransferase n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CML4_ELIME
Uncharacterized protein {ECO:0000313|EMBL:KFC20298.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
glycosyltransferase; K07011
SCNpilot_cont_300_bf_scaffold_386_curated_17
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19413..19961
DNA (549bp) protein (183aa)
Thioredoxin n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NGD2_ELIME
Thioredoxin {ECO:0000313|EMBL:KFC20300.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_386_curated_18
Chryseobacterium sp. P1-3, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(20025..20528)
DNA (504bp) protein (168aa)
50S ribosomal protein L9 n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W277_9FLAO
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1517683 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. P1-3.;"
50S ribosomal protein L9
SCNpilot_cont_300_bf_scaffold_386_curated_19
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(20695..20997)
DNA (303bp) protein (101aa)
30S ribosomal protein S18 n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CF81_9FLAO
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
SSU ribosomal protein S18p; K02963 small subunit ribosomal protein S18
SCNpilot_cont_300_bf_scaffold_386_curated_20
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(21026..21367)
DNA (342bp) protein (114aa)
30S ribosomal protein S6 n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X6C5_FLAB3
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
SSU ribosomal protein S6p; K02990 small subunit ribosomal protein S6
SCNpilot_cont_300_bf_scaffold_386_curated_21
Flavobacteriaceae bacterium 3519-10, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21493..23154)
DNA (1662bp) protein (554aa)
Peptidase M4, thermolysin n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X6C4_FLAB3
peptidase M4, thermolysin
Peptidase M4, thermolysin {ECO:0000313|EMBL:ACU07962.1}; TaxID=531844 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae.;" source="Flavobacteriaceae bacterium (strain 3519-10).;"
SCNpilot_cont_300_bf_scaffold_386_curated_22
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23300..24643)
DNA (1344bp) protein (448aa)
Chloride channel protein EriC n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CFN9_9FLAO
Chloride channel protein {ECO:0000313|EMBL:KFC22797.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
chloride channel protein
SCNpilot_cont_300_bf_scaffold_386_curated_23
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24646..25389)
DNA (744bp) protein (248aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
Dihydropteroate synthase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7F5_9FLAO
dihydropteroate synthase
SCNpilot_cont_300_bf_scaffold_386_curated_24
Winogradskyella psychrotolerans, Winogradskyella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25553..26689
DNA (1137bp) protein (379aa)
Internalin-like protein n=1 Tax=Winogradskyella psychrotolerans RS-3 RepID=S7VVC6_9FLAO
Internalin-like protein {ECO:0000313|EMBL:EPR74190.1}; TaxID=641526 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Winogradskyella.;" source="Winogradskyella psychrotolerans RS-3.;"
lipoprotein
SCNpilot_cont_300_bf_scaffold_386_curated_25
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

26765..27301
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7F6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC20308.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_386_curated_26
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27307..28383
DNA (1077bp) protein (359aa)
DoxX family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7F7_9FLAO
Doxx family protein {ECO:0000313|EMBL:KFC20309.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_386_curated_27
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

28392..28742
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7F8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC22803.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_386_curated_28
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

28750..29511
DNA (762bp) protein (254aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
Triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X673_FLAB3
SCNpilot_cont_300_bf_scaffold_386_curated_29
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

29579..29977
DNA (399bp) protein (133aa)
Lactoylglutathione lyase and related lyase n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X0X8_FLAB3
Uncharacterized protein {ECO:0000313|EMBL:KFC22805.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
Lactoylglutathione lyase and related lyase
SCNpilot_cont_300_bf_scaffold_386_curated_30
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

30726..31322
DNA (597bp) protein (199aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W379_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC20336.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
CRP/FNR family transcriptional regulator
Displaying items 1-30 of 127 in total

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