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SCNpilot_expt_500_bf_scaffold_88_curated

Search features with annotation key words

Displaying items 1-30 of 132 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_88_curated_1
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..1030
DNA (1029bp) protein (343aa)
Uncharacterized protein (Fragment) n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G453_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI89971.1}; Flags: Fragment;; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
periplasmic protein
SCNpilot_expt_500_bf_scaffold_88_curated_2
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1570..2478
DNA (909bp) protein (303aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
C1q domain containing protein {ECO:0000313|EMBL:EJL69616.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_500_bf_scaffold_88_curated_3
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2793..3728
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W3F2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CEJ71616.1}; Flags: Precursor;; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
SCNpilot_expt_500_bf_scaffold_88_curated_4
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3742..4647
DNA (906bp) protein (302aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CEJ71616.1}; Flags: Precursor;; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
SCNpilot_expt_500_bf_scaffold_88_curated_5
unknown

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comp(4717..4866)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_curated_6
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4909..5817
DNA (909bp) protein (303aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
C1q domain containing protein {ECO:0000313|EMBL:EJL69616.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_500_bf_scaffold_88_curated_7
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5824..6768
DNA (945bp) protein (315aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
C1q domain containing protein {ECO:0000313|EMBL:EJL69616.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_500_bf_scaffold_88_curated_8
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6810..7709
DNA (900bp) protein (300aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF10558.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
SCNpilot_expt_500_bf_scaffold_88_curated_9
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8934..9698)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034AD6E8
LytTR family two component system response regulatory protein
Tax=GWF1_Flavobacteria_32_7_curated
SCNpilot_expt_500_bf_scaffold_88_curated_10
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(9788..12823)
DNA (3036bp) protein (1012aa)
Putative periplasmic ligand-binding sensor domain protein id=3532315 bin=GWF2_Bacteroidetes_38_335 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
signal transduction histidine kinase LytS
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_bf_scaffold_88_curated_11
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13093..14997)
DNA (1905bp) protein (635aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B42BF3
histidine kinase
SCNpilot_expt_500_bf_scaffold_88_curated_12
unknown

Not on your lists

comp(15206..15322)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_curated_13
RBG_13_Bacteroidetes_46_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15348..15623
DNA (276bp) protein (92aa)
RNP-1 like RNA-binding protein n=1 Tax=Imtechella halotolerans K1 RepID=I0W5M8_9FLAO
RNP-1 like RNA-binding protein
Tax=RBG_13_Bacteroidetes_46_8_curated
SCNpilot_expt_500_bf_scaffold_88_curated_14
Imtechella halotolerans, Imtechella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15792..16226
DNA (435bp) protein (145aa)
ColD-shock DNA-binding protein family n=1 Tax=Imtechella halotolerans K1 RepID=I0W5N0_9FLAO
ColD-shock DNA-binding protein family {ECO:0000313|EMBL:EID71696.1}; TaxID=946077 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Imtechella.;" source="Imtechella halotolerans K1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_88_curated_15
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16242..16433
DNA (192bp) protein (64aa)
cold-shock protein n=1 Tax=Empedobacter brevis RepID=UPI000371C01A
Cold shock protein {ECO:0000313|EMBL:EIJ38822.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_500_bf_scaffold_88_curated_16
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16492..17550)
DNA (1059bp) protein (353aa)
3-oxoacyl-[acyl-carrier-protein] synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-(Acyl-carrier-protein) synthase III n=1 Tax=Chryseobacterium sp. CF314 RepID=J2JL20_9FLAO
3-oxoacyl-(Acyl-carrier-protein) synthase III {ECO:0000313|EMBL:EJL68565.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_500_bf_scaffold_88_curated_17
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17761..18210)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003819EF6
Transcriptional regulator {ECO:0000313|EMBL:KGO88489.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
two-component system-response regulator, receiver domain
SCNpilot_expt_500_bf_scaffold_88_curated_18
unknown

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comp(18457..18711)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_curated_19
unknown

Not on your lists

comp(18719..18952)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_curated_20
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19144..19899
DNA (756bp) protein (252aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FDC2_FLAJ1
Contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25246.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_88_curated_21
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20025..20864
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00037AD121
Mechanosensitive ion channel protein MscS {ECO:0000313|EMBL:KGO94096.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
mechanosensitive ion channel MscS; K03442 small conductance mechanosensitive channel
SCNpilot_expt_500_bf_scaffold_88_curated_22
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20886..21545)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00036ECE44
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein
MgtC/SapB transporter {ECO:0000313|EMBL:ADY52549.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_500_bf_scaffold_88_curated_23
unknown

Not on your lists

comp(21542..21793)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_curated_24
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21871..22122)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPP5_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU62455.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_88_curated_25
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22323..24500
DNA (2178bp) protein (726aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FDC1_FLAJ1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ06792.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
SCNpilot_expt_500_bf_scaffold_88_curated_26
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24507..24737
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Burkholderia terrae BS001 RepID=I5CWJ4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIN00263.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_88_curated_27
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24869..25465
DNA (597bp) protein (199aa)
Putative outer membrane protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2JUE5_9FLAO
Putative outer membrane protein {ECO:0000313|EMBL:EJL64583.1}; Flags: Precursor;; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_88_curated_28
unknown

Not on your lists

25468..25716
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_curated_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25781..26959)
DNA (1179bp) protein (393aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJ87_NIAKG
histidine kinase
SCNpilot_expt_500_bf_scaffold_88_curated_30
Cellulophaga geojensis, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27651..28100
DNA (450bp) protein (150aa)
Response regulator receiver n=1 Tax=Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) RepID=F0RI11_CELLC
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:EWH14383.1}; TaxID=1328323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga geojensis KL-A.;"
Displaying items 1-30 of 132 in total

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