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SCNpilot_expt_1000_bf_scaffold_1027_curated

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1027_curated_1
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..443
DNA (441bp) protein (147aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1]
UPI0003CF6B48 related cluster n=1 Tax=unknown RepID=UPI0003CF6B48
DNA ligase D {ECO:0000313|EMBL:ESY76682.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_expt_1000_bf_scaffold_1027_curated_2
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

855..1208
DNA (354bp) protein (118aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y7F8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH12280.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1027_curated_3
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1308..1472)
DNA (165bp) protein (55aa)
UPI0003CE60D3 related cluster n=1 Tax=unknown RepID=UPI0003CE60D3
Uncharacterized protein {ECO:0000313|EMBL:ESY74896.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1027_curated_4
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2066..2368
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FGG8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV15431.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1027_curated_5
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2723..3703
DNA (981bp) protein (327aa)
Transposase IS1595 n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GAE3_9RHIZ
ISSpo8, transposase
ISSpo8, transposase {ECO:0000313|EMBL:ADV10653.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1027_curated_6
unknown

Not on your lists

4248..4739
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1027_curated_7
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4926..5447)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2H657_9RHOB
DNA repair protein {ECO:0000313|EMBL:EZQ15006.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1027_curated_8
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5447..5656)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TYX9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EXL07950.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1027_curated_9
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5653..6126)
DNA (474bp) protein (158aa)
Transposase {ECO:0000313|EMBL:EDQ32755.1}; EC=2.7.7.49 {ECO:0000313|EMBL:EDQ32755.1};; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
Helix-turn-helix, Fis-type n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D8M1_9RHIZ
helix-turn-helix, fis-type
SCNpilot_expt_1000_bf_scaffold_1027_curated_10
unknown

Not on your lists

comp(6648..6932)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1027_curated_11
Natrialba magadii, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7640..8845
DNA (1206bp) protein (402aa)
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase n=1 Tax=Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) RepID=D3T136_NATMM
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:ADD07295.1}; Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:ELY32723.1}; TaxID=547559 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3); (Natronobacterium magadii).;"
SCNpilot_expt_1000_bf_scaffold_1027_curated_12
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8877..9917
DNA (1041bp) protein (347aa)
Putative basic membrane lipoprotein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RQ26_9RHOB
Lipoprotein {ECO:0000313|EMBL:KIC07711.1}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-M1.;"
putative basic membrane lipoprotein
SCNpilot_expt_1000_bf_scaffold_1027_curated_13
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

10007..11542
DNA (1536bp) protein (512aa)
ATPase component of uncharacterized ABC-type transporter n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KH78_MESAW
ATPase component of uncharacterized ABC-type transporter
Tax=RBG_16_Chloroflexi_57_11_curated
SCNpilot_expt_1000_bf_scaffold_1027_curated_14
RBG_16_Chloroflexi_47_49_curated, Chloroflexi, Bacteria

Not on your lists

11542..12621
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FFA7_9RHIZ
ABC transporter permease; K02057 simple sugar transport system permease protein
Tax=RBG_16_Chloroflexi_47_49_curated
SCNpilot_expt_1000_bf_scaffold_1027_curated_15
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

12614..13558
DNA (945bp) protein (315aa)
ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FI05_9RHIZ
putative ABC transporter permease protein
Tax=RBG_16_Chloroflexi_57_11_curated
SCNpilot_expt_1000_bf_scaffold_1027_curated_16
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(13575..14510)
DNA (936bp) protein (312aa)
Transcriptional regulator LysR family n=1 Tax=Patulibacter medicamentivorans RepID=H0E0E9_9ACTN
Transcriptional regulator LysR family {ECO:0000313|EMBL:EHN12854.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1027_curated_17
unknown

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comp(14614..15201)
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1027_curated_18
unknown

Not on your lists

15416..15532
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1027_curated_19
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16060..16977
DNA (918bp) protein (306aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas wittichii RepID=UPI0002E10FB1
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ABQ67295.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1027_curated_20
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16984..17727
DNA (744bp) protein (248aa)
short-chain dehydrogenase n=1 Tax=Nocardiopsis alkaliphila RepID=UPI000347C973
Oxidoreductase {ECO:0000313|EMBL:AIX74059.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1027_curated_21
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

17724..18491
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Salinispora arenicola RepID=UPI0003717AAB
putative lipid biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase
Tax=RBG_16_Chloroflexi_52_11_curated
SCNpilot_expt_1000_bf_scaffold_1027_curated_22
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

18484..19815
DNA (1332bp) protein (444aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Aspartyl-tRNA(Asn) amidotransferase subunit A n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RGS3_9RHIZ
Tax=RBG_16_Chloroflexi_64_32_curated
SCNpilot_expt_1000_bf_scaffold_1027_curated_23
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

20025..20870
DNA (846bp) protein (282aa)
putative xanthine dehydrogenase FAD-binding subunit (EC:1.17.1.4)
Putative xanthine dehydrogenase FAD-binding subunit {ECO:0000313|EMBL:BAN02846.1}; EC=1.17.1.4 {ECO:0000313|EMBL:BAN02846.1};; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Putative xanthine dehydrogenase FAD-binding subunit n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A361_9ACTN
SCNpilot_expt_1000_bf_scaffold_1027_curated_24

Not on your lists

20888..21367
DNA (480bp) protein (160aa)
Xanthine dehydrogenase iron-sulfur-binding subunit n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A278_9ACTN
Xanthine dehydrogenase iron-sulfur-binding subunit {ECO:0000313|EMBL:KGA11994.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
xanthine dehydrogenase iron-sulfur-binding subunit
SCNpilot_expt_1000_bf_scaffold_1027_curated_25
marine actinobacterium MedAcidi-G2B, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21360..23648
DNA (2289bp) protein (763aa)
putative xanthine dehydrogenase molybdopterin-binding subunit (EC:1.17.1.4)
Putative xanthine dehydrogenase molybdopterin-binding subunit n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A209_9ACTN
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:KIE50508.1}; TaxID=1550401 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2B.;"
SCNpilot_expt_1000_bf_scaffold_1027_curated_26
Streptomyces sp. MBRL 601, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23707..24456
DNA (750bp) protein (250aa)
Transcriptional regulator, GntR family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IIB2_XANP2
GntR family transcriptional regulator {ECO:0000313|EMBL:KIX79599.1}; TaxID=1592330 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MBRL 601.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1027_curated_27
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24497..25126
DNA (630bp) protein (210aa)
Bll3657 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89P26_BRADU
Uncharacterized protein {ECO:0000313|EMBL:KFI32420.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1027_curated_28
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25196..25690
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Phaeobacter gallaeciensis RepID=UPI000305FCB2
Uncharacterized protein {ECO:0000313|EMBL:KID08931.1}; TaxID=1002340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG1.;"
cytosine/adenosine deaminase
SCNpilot_expt_1000_bf_scaffold_1027_curated_29
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25762..26481
DNA (720bp) protein (240aa)
UPI0003CFE68F related cluster n=1 Tax=unknown RepID=UPI0003CFE68F
putative transcriptional regulator
MerR family transcriptional regulator {ECO:0000313|EMBL:ESY98596.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
SCNpilot_expt_1000_bf_scaffold_1027_curated_30
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26597..27211)
DNA (615bp) protein (205aa)
Truncated transposase n=1 Tax=Rhizobium loti RepID=M5AND9_RHILI
Truncated transposase {ECO:0000313|EMBL:BAN09947.1}; TaxID=381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (Mesorhizobium loti).;"
transposase IS4 family protein
Displaying items 1-30 of 63 in total

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