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SCNpilot_expt_1000_bf_scaffold_2829_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2829_curated_1
unknown

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207..521
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2829_curated_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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584..2692
DNA (2109bp) protein (703aa)
Nitrate reductase (EC:1.7.99.4)
UPI0003CE670B related cluster n=1 Tax=unknown RepID=UPI0003CE670B
Nitrate reductase {ECO:0000313|EMBL:CDX61639.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_2829_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2706..3224)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQE8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57070.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
phosphohistidine phosphatase SixA
SCNpilot_expt_1000_bf_scaffold_2829_curated_4
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3236..3838)
DNA (603bp) protein (201aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
PREDICTED: trifunctional purine biosynthetic protein adenosine-3-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1970F
SCNpilot_expt_1000_bf_scaffold_2829_curated_5
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3911..4975)
DNA (1065bp) protein (355aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans S
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EMX3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2829_curated_6
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5154..5711
DNA (558bp) protein (186aa)
hypothetical protein; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
UPI0003CEB398 related cluster n=1 Tax=unknown RepID=UPI0003CEB398
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:ESW82990.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_2829_curated_7
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5683..6858
DNA (1176bp) protein (392aa)
UPI0003CFC660 related cluster n=1 Tax=unknown RepID=UPI0003CFC660
Membrane protein {ECO:0000313|EMBL:ESZ17844.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
putative permease
SCNpilot_expt_1000_bf_scaffold_2829_curated_8
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6862..7563
DNA (702bp) protein (234aa)
Chromosomal replication initiator DnaA n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TJM3_MESCW
Chromosomal replication initiator DnaA
Chromosomal replication initiator DnaA {ECO:0000313|EMBL:ADV13785.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_2829_curated_9
Serratia multitudinisentens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7591..8478)
DNA (888bp) protein (296aa)
carboxymethylenebutenolidase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
dienelactone hydrolase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035F85CB
Dienelactone hydrolase {ECO:0000313|EMBL:AHG22462.1}; TaxID=1441930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia multitudinisentens RB-25.;"
SCNpilot_expt_1000_bf_scaffold_2829_curated_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9171..9476)
DNA (306bp) protein (102aa)
ETC complex I subunit n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FK65_9RHIZ
ETC complex I subunit {ECO:0000313|EMBL:ESW82986.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ETC complex I subunit conserved region
SCNpilot_expt_1000_bf_scaffold_2829_curated_11
unknown

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comp(9758..9907)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2829_curated_12
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10033..11202)
DNA (1170bp) protein (390aa)
Cystathionine beta-lyase {ECO:0000313|EMBL:EHH13103.1}; EC=4.4.1.8 {ECO:0000313|EMBL:EHH13103.1};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
cystathionine beta-lyase (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8] rbh
Cystathionine beta-lyase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y552_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2829_curated_13
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11527..12675
DNA (1149bp) protein (383aa)
Cationic amino acid ABC transporter, periplasmic binding protein n=2 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y4T7_MESOW
Amino acid ABC transporter substrate-bindnig protein {ECO:0000313|EMBL:EXL08779.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
cationic amino acid ABC transporter periplasmic binding protein
SCNpilot_expt_1000_bf_scaffold_2829_curated_14
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12817..13959
DNA (1143bp) protein (381aa)
amino acid ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI000374FB9D
Amino acid ABC transporter permease {ECO:0000313|EMBL:EZQ15127.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
polar amino acid ABC transporter inner membrane subunit; K09970 general L-amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2829_curated_15
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13963..15120
DNA (1158bp) protein (386aa)
Amino acid ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FJJ3_9RHIZ
Amino acid ABC transporter permease {ECO:0000313|EMBL:EZQ15126.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
polar amino acid ABC transporter inner membrane subunit; K09971 general L-amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2829_curated_16
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15138..15941
DNA (804bp) protein (268aa)
ABC transporter; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
PREDICTED: sulfate/thiosulfate import ATP-binding protein CysA-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C13A50
Arginine ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESY66598.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_expt_1000_bf_scaffold_2829_curated_17
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16011..17243)
DNA (1233bp) protein (411aa)
FAD dependent oxidoreductase; K00480 salicylate hydroxylase [EC:1.14.13.1]
FAD dependent oxidoreductase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TJJ9_MESCW
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADV13761.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_2829_curated_18
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17255..17500)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000371B8AC
Uncharacterized protein {ECO:0000313|EMBL:ESZ63872.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2829_curated_19
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17644..19848
DNA (2205bp) protein (735aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1]
PREDICTED: polyphosphate kinase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C186A7
SCNpilot_expt_1000_bf_scaffold_2829_curated_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19845..21377
DNA (1533bp) protein (511aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Exopolyphosphatase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FB72_9RHIZ
Ppx/GppA phosphatase {ECO:0000313|EMBL:CDX22002.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_2829_curated_21
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21370..21780)
DNA (411bp) protein (137aa)
DoxX family protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y3T7_MESOW
DoxX family protein; K15977 putative oxidoreductase
DoxX family protein {ECO:0000313|EMBL:AEH89556.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2829_curated_22
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21925..22347)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000365B512
Membrane protein {ECO:0000313|EMBL:ESY66424.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein; K15977 putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2829_curated_23
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22450..23847)
DNA (1398bp) protein (466aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
class II fumarate hydratase; K01679 fumarate hydratase, class II [EC:4.2.1.2]
fumarate hydratase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E70B1C
SCNpilot_expt_1000_bf_scaffold_2829_curated_24
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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24635..25768
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FKN1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV13014.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
metallophosphoesterase
SCNpilot_expt_1000_bf_scaffold_2829_curated_25
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25801..25980)
DNA (180bp) protein (60aa)
UPI0003CFA21E related cluster n=1 Tax=unknown RepID=UPI0003CFA21E
Uncharacterized protein {ECO:0000313|EMBL:ESZ20649.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
CsbD family protein
SCNpilot_expt_1000_bf_scaffold_2829_curated_26
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26294..27583)
DNA (1290bp) protein (430aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
citrate synthase I (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F544_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2829_curated_27
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27763..29331)
DNA (1569bp) protein (523aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
glutamyl-tRNA synthetase n=1 Tax=Rhizobium loti RepID=UPI00035D073B
Displaying 27 items

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