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SCNpilot_expt_1000_bf_scaffold_1553_curated

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1553_curated_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..122
DNA (120bp) protein (40aa)
3-methyl-adenine DNA glycosylase I, constitutive {ECO:0000313|EMBL:CDX19572.1}; EC=3.2.2.20 {ECO:0000313|EMBL:CDX19572.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
DNA-3-methyladenine glycosylase I n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YED4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1553_curated_2
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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252..1808
DNA (1557bp) protein (519aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] rbh
Histidine--tRNA ligase; EC=6.1.1.21;; Histidyl-tRNA synthetase; Short=HisRS;; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
histidyl-tRNA synthase n=1 Tax=Rhizobium loti RepID=UPI00037A17E0
SCNpilot_expt_1000_bf_scaffold_1553_curated_3
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1849..2970
DNA (1122bp) protein (374aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YED1_9RHIZ
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hisZ; ATP phosphoribosyltransferase; K02502 ATP phosphoribosyltransferase regulatory subunit rbh
SCNpilot_expt_1000_bf_scaffold_1553_curated_4
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2967..3671
DNA (705bp) protein (235aa)
ATP phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00046302}; EC=2.4.2.17 {ECO:0000256|SAAS:SAAS00046302};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ATP phosphoribosyltransferase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIA8_MESAW
ATP phosphoribosyltransferase
SCNpilot_expt_1000_bf_scaffold_1553_curated_5
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3710..5035
DNA (1326bp) protein (442aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
two-component, sensor histidine protein kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3] rbh
ATPase n=1 Tax=Rhizobium loti RepID=UPI000367C9DD
SCNpilot_expt_1000_bf_scaffold_1553_curated_6
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5152..5715
DNA (564bp) protein (188aa)
Two-component, response regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98C39_RHILO
Chemotaxis protein CheY {ECO:0000313|EMBL:EXL03176.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
two-component, response regulator; K15012 two-component system, response regulator RegA rbh
SCNpilot_expt_1000_bf_scaffold_1553_curated_7
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6813..7409
DNA (597bp) protein (199aa)
UPI0003CE7481 related cluster n=1 Tax=unknown RepID=UPI0003CE7481
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
Na+/H+ antiporter; K03313 Na+:H+ antiporter, NhaA family rbh
SCNpilot_expt_1000_bf_scaffold_1553_curated_8
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7433..7945)
DNA (513bp) protein (171aa)
Mll5310 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98C37_RHILO
hypothetical protein rbh
Mll5310 protein {ECO:0000313|EMBL:BAB51784.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_1553_curated_9
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7985..8395)
DNA (411bp) protein (137aa)
Cu(I)-responsive transcriptional regulator n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T841_MESCW
Cu(I)-responsive transcriptional regulator {ECO:0000313|EMBL:AID34140.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
Cu(I)-responsive transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1553_curated_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8628..9242
DNA (615bp) protein (205aa)
UPI0003D02596 related cluster n=1 Tax=unknown RepID=UPI0003D02596
Uncharacterized protein {ECO:0000313|EMBL:EXL03179.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1553_curated_11
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9349..9918)
DNA (570bp) protein (190aa)
iron transporter n=1 Tax=Rhizobium loti RepID=UPI0003730700
Scaffold Nfu/NifU N terminal family protein {ECO:0000313|EMBL:AID34142.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1553_curated_12
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10115..10606)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F076_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV09731.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
UspA domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1553_curated_13
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10698..12884)
DNA (2187bp) protein (729aa)
UPI0003CF2F67 related cluster n=1 Tax=unknown RepID=UPI0003CF2F67
Long-chain fatty acid--CoA ligase {ECO:0000313|EMBL:ESY83467.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_1000_bf_scaffold_1553_curated_14
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13245..14837
DNA (1593bp) protein (531aa)
UPI0003D06B22 related cluster n=1 Tax=unknown RepID=UPI0003D06B22
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESZ09561.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
family 5 extracellular solute-binding protein; K12368 dipeptide transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1553_curated_15
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14903..15910
DNA (1008bp) protein (336aa)
Dipeptide transporter membrane component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5EX49_9RHIZ
Dipeptide transporter membrane component of ABC superfamily {ECO:0000313|EMBL:CCV09662.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ABC transporter permease; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1553_curated_16
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15910..16827
DNA (918bp) protein (306aa)
Dipeptide transporter membrane component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F001_9RHIZ
Dipeptide transporter membrane component of ABC superfamily {ECO:0000313|EMBL:CCV09661.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
binding-protein-dependent transport systems inner membrane component; K12370 dipeptide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1553_curated_17
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16831..17673
DNA (843bp) protein (281aa)
UPI0003CFE4E3 related cluster n=1 Tax=unknown RepID=UPI0003CFE4E3
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:EZQ17451.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
ABC transporter; K12371 dipeptide transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1553_curated_18
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17676..18500
DNA (825bp) protein (275aa)
ABC transporter ATP-binding component n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98BU7_RHILO
ABC transporter ATP-binding component {ECO:0000313|EMBL:CDX14873.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC transporter ATP-binding protein; K12372 dipeptide transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1553_curated_19
unknown

Not on your lists

comp(18527..19171)
DNA (645bp) protein (215aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1553_curated_20
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19210..19704)
DNA (495bp) protein (165aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JAV8_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:EZQ13460.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein; K07170 GAF domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1553_curated_21
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19784..20689)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EFS5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV03404.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_1000_bf_scaffold_1553_curated_22
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20820..21080)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F043_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV09701.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1553_curated_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21180..23015)
DNA (1836bp) protein (612aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ilvD1; dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A0I5_RHIFH
SCNpilot_expt_1000_bf_scaffold_1553_curated_24
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23210..26323)
DNA (3114bp) protein (1038aa)
Acriflavine resistance protein B n=4 Tax=Mesorhizobium RepID=V7EXE6_9RHIZ
Acriflavine resistance protein B {ECO:0000313|EMBL:ESZ58970.1}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
cation/multidrug efflux pump
SCNpilot_expt_1000_bf_scaffold_1553_curated_25
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26320..27555)
DNA (1236bp) protein (412aa)
UPI0003D005AF related cluster n=1 Tax=unknown RepID=UPI0003D005AF
Hemolysin D {ECO:0000313|EMBL:ESZ21944.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_1000_bf_scaffold_1553_curated_26
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27680..28216
DNA (537bp) protein (179aa)
Regulatory protein TetR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8G0_MESCW
TetR family transcriptional regulator
Regulatory protein TetR {ECO:0000313|EMBL:ADV10616.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1553_curated_27
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28261..29172
DNA (912bp) protein (304aa)
Transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFH2_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:ESW87004.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1553_curated_28
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29302..30462
DNA (1161bp) protein (387aa)
Extracellular solute-binding protein family 1 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T751_MESCW
family 1 extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ADV09325.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1553_curated_29
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30608..31606
DNA (999bp) protein (333aa)
ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFH4_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EHH09513.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
ABC-type spermidine/putrescine transport system, ATPase component
SCNpilot_expt_1000_bf_scaffold_1553_curated_30
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31603..32568
DNA (966bp) protein (322aa)
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KE33_MESAW
ABC-type spermidine/putrescine transport system, permease component I
ABC-type spermidine/putrescine transport system, permease component I {ECO:0000313|EMBL:AGB42649.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
Displaying items 1-30 of 63 in total

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