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SCNpilot_expt_1000_bf_scaffold_3765_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3765_curated_1
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..789)
DNA (789bp) protein (263aa)
Probable iron-containing alcohol dehydrogenase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VGB6_9RHOB
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:KFB08311.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
iron-containing alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3765_curated_2
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1269..1754
DNA (486bp) protein (162aa)
30S ribosomal protein S6 n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y640_MESOW
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_expt_1000_bf_scaffold_3765_curated_3
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1754..2002
DNA (249bp) protein (83aa)
30S ribosomal protein S18 n=1 Tax=Hoeflea sp. 108 RepID=UPI00036C2CF0
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
SCNpilot_expt_1000_bf_scaffold_3765_curated_4
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2208..2786
DNA (579bp) protein (193aa)
PREDICTED: 50S ribosomal protein L9, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C16E1A
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_expt_1000_bf_scaffold_3765_curated_5
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2923..4242
DNA (1320bp) protein (440aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQJ7_9RHIZ
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:EZQ15419.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_3765_curated_6
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4338..4661
DNA (324bp) protein (108aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003690E52
UPF0060 membrane protein MCHK_1272 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein; K09771 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3765_curated_7
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4664..5629
DNA (966bp) protein (322aa)
UPI0003CE70AB related cluster n=1 Tax=unknown RepID=UPI0003CE70AB
Methyltransferase type 11 {ECO:0000313|EMBL:ESY77080.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
ribosomal small subunit Rsm22
SCNpilot_expt_1000_bf_scaffold_3765_curated_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6518..7279
DNA (762bp) protein (254aa)
Putative replicative DNA helicase, dnaB {ECO:0000313|EMBL:CDX33794.1}; EC=3.6.1.- {ECO:0000313|EMBL:CDX33794.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
Putative replicative DNA helicase, dnaB n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F967_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3765_curated_9
unknown

Not on your lists

comp(7339..7518)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3765_curated_10
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8732..9397
DNA (666bp) protein (222aa)
UPI0003CFF0EF related cluster n=1 Tax=unknown RepID=UPI0003CFF0EF
Colicin V synthesis protein {ECO:0000313|EMBL:ESZ17913.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
Colicin V production protein; K03558 membrane protein required for colicin V production
SCNpilot_expt_1000_bf_scaffold_3765_curated_11
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9475..10506
DNA (1032bp) protein (344aa)
amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizo
Amidophosphoribosyltransferase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLJ7_MESCW
SCNpilot_expt_1000_bf_scaffold_3765_curated_12
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10497..10943
DNA (447bp) protein (149aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhiz
amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
Amidophosphoribosyltransferase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EPE5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3765_curated_13
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10971..11375)
DNA (405bp) protein (135aa)
DoxX n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQK5_9RHIZ
DoxX {ECO:0000313|EMBL:EHK56982.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
DoxX
SCNpilot_expt_1000_bf_scaffold_3765_curated_14
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11543..12304
DNA (762bp) protein (254aa)
PREDICTED: tropinone reductase 1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C11A86
Oxidoreductase {ECO:0000313|EMBL:EZQ15425.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_3765_curated_15
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12403..13029
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLJ9_MESCW
Uncharacterized protein {ECO:0000313|EMBL:EZQ15426.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3765_curated_16
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13495..14001)
DNA (507bp) protein (169aa)
UPI0003CF2702 related cluster n=1 Tax=unknown RepID=UPI0003CF2702
Peroxiredoxin {ECO:0000313|EMBL:ESY67945.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
OsmC family protein
SCNpilot_expt_1000_bf_scaffold_3765_curated_17
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14189..15079
DNA (891bp) protein (297aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y9Z3_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH11504.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3765_curated_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15161..16063
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQL0_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56987.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3765_curated_19
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16327..18033
DNA (1707bp) protein (569aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KR38_MESAW
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:AGB47155.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_3765_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18017..18538
DNA (522bp) protein (174aa)
2-acylglycerophosphoethanolamine acyl transferase/acyl carrier protein synthetase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQL2_9RHIZ
2-acylglycerophosphoethanolamine acyl transferase/acyl carrier protein synthetase {ECO:0000313|EMBL:EHK56989.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
2-acylglycerophosphoethanolamine acyltransferase
SCNpilot_expt_1000_bf_scaffold_3765_curated_21
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18633..19457)
DNA (825bp) protein (275aa)
CDP-alcohol phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FJS5_9RHIZ
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:EZQ13676.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_3765_curated_22
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19466..20164)
DNA (699bp) protein (233aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
phosphatidylserine decarboxylase-like protein (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ENT9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3765_curated_23
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20371..21195
DNA (825bp) protein (275aa)
Protein chrB n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LS14_9RHIZ
Protein chrB {ECO:0000313|EMBL:EKF20569.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
chromate resistance exported protein
SCNpilot_expt_1000_bf_scaffold_3765_curated_24
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21192..22601
DNA (1410bp) protein (470aa)
Chromate transporter n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N8Y6_9RHIZ
Chromate transporter {ECO:0000313|EMBL:EKF20568.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
chrA; chromate transport protein; K07240 chromate transporter
SCNpilot_expt_1000_bf_scaffold_3765_curated_25
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22608..22985)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FFI0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV16062.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
dgpfaetke family protein
SCNpilot_expt_1000_bf_scaffold_3765_curated_26
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23070..24893)
DNA (1824bp) protein (608aa)
UPI0003D032D0 related cluster n=1 Tax=unknown RepID=UPI0003D032D0
Metal ABC transporter permease {ECO:0000313|EMBL:ESZ17926.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_3765_curated_27
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25435..26895)
DNA (1461bp) protein (487aa)
peptigoglycan-binding protein LysM n=1 Tax=Rhizobium loti RepID=UPI00036D4B5A
Uncharacterized protein containing LysM domain {ECO:0000313|EMBL:ETA72179.1}; Flags: Precursor;; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3765_curated_28
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26897..27619
DNA (723bp) protein (241aa)
UPI0003CEDDE0 related cluster n=1 Tax=unknown RepID=UPI0003CEDDE0
Lysine decarboxylase {ECO:0000313|EMBL:ESY63395.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein; K06966
SCNpilot_expt_1000_bf_scaffold_3765_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27603..28529)
DNA (927bp) protein (309aa)
Putative RarD protein, chloramphenicol transporter n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQM0_9RHIZ
Putative RarD protein, chloramphenicol transporter {ECO:0000313|EMBL:EHK56935.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative RarD protein, chloramphenicol transporter; K05786 chloramphenicol-sensitive protein RarD
SCNpilot_expt_1000_bf_scaffold_3765_curated_30
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28625..30043)
DNA (1419bp) protein (473aa)
alpha-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13] rbh
Putative alpha-isopropylmalate/homocitrate synthase family transferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y9X3_9RHIZ
Putative alpha-isopropylmalate/homocitrate synthase family transferase {ECO:0000313|EMBL:EHH11484.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Displaying 30 items

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